Results 21 - 40 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30406 | 3' | -53.9 | NC_006548.1 | + | 6981 | 0.71 | 0.441679 |
Target: 5'- uGCGUCGuCGACAgacuccgcACGgaucaagcCGCUGGCGCg -3' miRNA: 3'- cCGCAGCuGCUGU--------UGUa-------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 36547 | 0.71 | 0.441679 |
Target: 5'- cGCGaugaUCGAUGACGAgAUcuuccgCGUCGACGCg -3' miRNA: 3'- cCGC----AGCUGCUGUUgUA------GCGGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 22080 | 0.71 | 0.451614 |
Target: 5'- cGGCGaCGAgGGCAugGU-GCCGAUGg -3' miRNA: 3'- -CCGCaGCUgCUGUugUAgCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 15756 | 0.7 | 0.492518 |
Target: 5'- cGC-UCGACGugGcgcguauagagcACAUCGCCGA-GCa -3' miRNA: 3'- cCGcAGCUGCugU------------UGUAGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11073 | 0.7 | 0.524281 |
Target: 5'- gGGUGcgCGACGGCAAcCAUCGgUCGAC-Ca -3' miRNA: 3'- -CCGCa-GCUGCUGUU-GUAGC-GGCUGcG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 25041 | 0.69 | 0.535045 |
Target: 5'- uGGCGUCGGCGGCGuuCAaggUGUCGuACaGCa -3' miRNA: 3'- -CCGCAGCUGCUGUu-GUa--GCGGC-UG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 32471 | 0.69 | 0.535045 |
Target: 5'- cGGCaaCGGCGGCGACGgcUGCCGGCcagGCu -3' miRNA: 3'- -CCGcaGCUGCUGUUGUa-GCGGCUG---CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 23367 | 0.69 | 0.545885 |
Target: 5'- -cCGUCGAUGuaGCcuugGGCAUCGCUGACcGCg -3' miRNA: 3'- ccGCAGCUGC--UG----UUGUAGCGGCUG-CG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 21395 | 0.69 | 0.586537 |
Target: 5'- gGGCGUCGGCcgucaGCGcaucaccgcgagugACGUUGCCGcCGUa -3' miRNA: 3'- -CCGCAGCUGc----UGU--------------UGUAGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 35878 | 0.69 | 0.566666 |
Target: 5'- uGGgGUCaugccaGACGACAACGaacugguUCGCCG-UGCc -3' miRNA: 3'- -CCgCAG------CUGCUGUUGU-------AGCGGCuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 7845 | 0.69 | 0.545885 |
Target: 5'- aGGCcUCGACcuaGACGACAUCGa--GCGCa -3' miRNA: 3'- -CCGcAGCUG---CUGUUGUAGCggcUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18611 | 0.69 | 0.566666 |
Target: 5'- aGCGUgGGCGACAGCgAUauccugcaugugcUGCgCGAUGCg -3' miRNA: 3'- cCGCAgCUGCUGUUG-UA-------------GCG-GCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2659 | 0.69 | 0.545885 |
Target: 5'- uGGUGcucaCGACcugGACAGCcUCGCCGAUGg -3' miRNA: 3'- -CCGCa---GCUG---CUGUUGuAGCGGCUGCg -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27633 | 0.69 | 0.589862 |
Target: 5'- cGGgGUCGGCGGCGAa---GgCGAgGCa -3' miRNA: 3'- -CCgCAGCUGCUGUUguagCgGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 27216 | 0.69 | 0.578791 |
Target: 5'- aGGCGgCGACcgaGCAACGcgcUGCCGAgGCg -3' miRNA: 3'- -CCGCaGCUGc--UGUUGUa--GCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 5112 | 0.69 | 0.578791 |
Target: 5'- -aUGUCgGGCGACGugauACAUCGCCu-CGCg -3' miRNA: 3'- ccGCAG-CUGCUGU----UGUAGCGGcuGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 30659 | 0.69 | 0.567766 |
Target: 5'- uGGCuGUCGugGGCuccuACcgUGgCGACGUu -3' miRNA: 3'- -CCG-CAGCugCUGu---UGuaGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 18568 | 0.69 | 0.535045 |
Target: 5'- cGGCGgccaCGACGGaccggguCAUUGgCGACGCu -3' miRNA: 3'- -CCGCa---GCUGCUguu----GUAGCgGCUGCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 11747 | 0.68 | 0.634417 |
Target: 5'- uGCG-CGGCGcGCGGCggCGCCGGgGUu -3' miRNA: 3'- cCGCaGCUGC-UGUUGuaGCGGCUgCG- -5' |
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30406 | 3' | -53.9 | NC_006548.1 | + | 2098 | 0.68 | 0.645575 |
Target: 5'- aGGCGUacaUGGCGA-AGCAccaCGCUGACGUc -3' miRNA: 3'- -CCGCA---GCUGCUgUUGUa--GCGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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