miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30407 3' -57.9 NC_006548.1 + 22299 0.66 0.455269
Target:  5'- uGCCgUugCGGGUGUcGGccaGGCGAUcGCg -3'
miRNA:   3'- gCGG-AugGUCCACGaCC---UCGCUGuCG- -5'
30407 3' -57.9 NC_006548.1 + 22806 0.83 0.028932
Target:  5'- gGCgCUACCAGGUGCUGcucAGCGACGGUu -3'
miRNA:   3'- gCG-GAUGGUCCACGACc--UCGCUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 24018 0.66 0.455269
Target:  5'- gCGCCUGCCAGGccg-GGcGGUGucCAGCc -3'
miRNA:   3'- -GCGGAUGGUCCacgaCC-UCGCu-GUCG- -5'
30407 3' -57.9 NC_006548.1 + 25708 0.82 0.035644
Target:  5'- gGC--ACCAGGUGCUGGAGCGGCAa- -3'
miRNA:   3'- gCGgaUGGUCCACGACCUCGCUGUcg -5'
30407 3' -57.9 NC_006548.1 + 25793 0.68 0.369403
Target:  5'- uGCCUguucggcACCAGGUaCUGGAGUuGCcGCu -3'
miRNA:   3'- gCGGA-------UGGUCCAcGACCUCGcUGuCG- -5'
30407 3' -57.9 NC_006548.1 + 27333 0.69 0.289369
Target:  5'- uCGCUcGCCuGGccgaGCaGGAGCGGCAGUu -3'
miRNA:   3'- -GCGGaUGGuCCa---CGaCCUCGCUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 29609 0.67 0.425747
Target:  5'- cCGCCUGCgGuGGaaagcgcuccUGCggcGGAgGUGACAGCa -3'
miRNA:   3'- -GCGGAUGgU-CC----------ACGa--CCU-CGCUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 29651 0.72 0.194947
Target:  5'- uGCCgcUGCCAgcGGUGCcGGuGCGGCAGg -3'
miRNA:   3'- gCGG--AUGGU--CCACGaCCuCGCUGUCg -5'
30407 3' -57.9 NC_006548.1 + 30417 0.67 0.401104
Target:  5'- gCGCCUGauGGGcggcacggcguucaaUGCUGGGGCGAUcccgcccgguGGCg -3'
miRNA:   3'- -GCGGAUggUCC---------------ACGACCUCGCUG----------UCG- -5'
30407 3' -57.9 NC_006548.1 + 32747 0.7 0.254413
Target:  5'- aGCCUugCAG--GCUGGGGCgGGCGGa -3'
miRNA:   3'- gCGGAugGUCcaCGACCUCG-CUGUCg -5'
30407 3' -57.9 NC_006548.1 + 32854 0.71 0.220635
Target:  5'- aCGCUUGCCAGcaGCUGGAuguccggccacacCGGCAGCg -3'
miRNA:   3'- -GCGGAUGGUCcaCGACCUc------------GCUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 33122 0.66 0.445304
Target:  5'- uGCCcucgacaacaUACCGGG-GCUGGccGGUgcucgGGCAGCg -3'
miRNA:   3'- gCGG----------AUGGUCCaCGACC--UCG-----CUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 33383 0.75 0.126435
Target:  5'- cCGCCgACCuGGUGCUGGucgacacaguggcuGCGAcCAGCu -3'
miRNA:   3'- -GCGGaUGGuCCACGACCu-------------CGCU-GUCG- -5'
30407 3' -57.9 NC_006548.1 + 35930 0.67 0.405773
Target:  5'- gGCCUACCGaccGGcgaGUUGGccggcagGGUGGCGGCg -3'
miRNA:   3'- gCGGAUGGU---CCa--CGACC-------UCGCUGUCG- -5'
30407 3' -57.9 NC_006548.1 + 36827 0.79 0.060695
Target:  5'- gCGCCUgGCCGGGUGCUGGuGUGugGuGUg -3'
miRNA:   3'- -GCGGA-UGGUCCACGACCuCGCugU-CG- -5'
30407 3' -57.9 NC_006548.1 + 37254 0.66 0.455269
Target:  5'- gGCCUGCCGGGaGaaGG-GCauuACAGCg -3'
miRNA:   3'- gCGGAUGGUCCaCgaCCuCGc--UGUCG- -5'
30407 3' -57.9 NC_006548.1 + 37561 0.69 0.323157
Target:  5'- gGCCUGCCGGGguugucucguuUGCgacuUGGAcacgccagcccagccGUGGCGGCa -3'
miRNA:   3'- gCGGAUGGUCC-----------ACG----ACCU---------------CGCUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.