Results 1 - 7 of 7 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 35003 | 0.69 | 0.496219 |
|
Target: 5'- -aGCAAuGGGCggCCGUAGCaaaGCGCAa- -3' miRNA: 3'- cgCGUU-CCUGaaGGCAUCG---UGCGUcu -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 33712 | 0.68 | 0.596459 |
|
Target: 5'- -aGCAcGGugUUCCGaggAGUACGCGa- -3' miRNA: 3'- cgCGUuCCugAAGGCa--UCGUGCGUcu -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 19140 | 0.67 | 0.642241 |
|
Target: 5'- aGCGCuGGGAgaUCCG-AGCGggcuucUGCAGGa -3' miRNA: 3'- -CGCGuUCCUgaAGGCaUCGU------GCGUCU- -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 32581 | 0.67 | 0.653689 |
|
Target: 5'- uGCGCc-GGACUgggCUGaUGGCGUGCAGGa -3' miRNA: 3'- -CGCGuuCCUGAa--GGC-AUCGUGCGUCU- -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 2248 | 0.97 | 0.006798 |
|
Target: 5'- cGCGCAAGGACUUCCugAGCACGCAGAa -3' miRNA: 3'- -CGCGUUCCUGAAGGcaUCGUGCGUCU- -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 29026 | 0.67 | 0.630783 |
|
Target: 5'- aGCGCcuucGGugUcacCCGUGGCGaGCAGAc -3' miRNA: 3'- -CGCGuu--CCugAa--GGCAUCGUgCGUCU- -5' |
|||||||
| 30407 | 5' | -53.5 | NC_006548.1 | + | 9051 | 0.66 | 0.685592 |
|
Target: 5'- uGUGCAuccauugAGGGCUg-CGUggagcacGGUACGCAGAg -3' miRNA: 3'- -CGCGU-------UCCUGAagGCA-------UCGUGCGUCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home