miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30409 5' -55.3 NC_006548.1 + 5899 0.66 0.618748
Target:  5'- cCAAGGcCGUUccguUCGGCG-GUGCCUUg -3'
miRNA:   3'- -GUUCC-GCGAcu--AGCUGCuCACGGAGg -5'
30409 5' -55.3 NC_006548.1 + 10234 0.66 0.596257
Target:  5'- gGAGGUcuaccGCg---CGAUGAGUGCCgCCa -3'
miRNA:   3'- gUUCCG-----CGacuaGCUGCUCACGGaGG- -5'
30409 5' -55.3 NC_006548.1 + 34055 0.66 0.596257
Target:  5'- -uGGGCag-GAUCGACGAGgugaacugGCCggCCg -3'
miRNA:   3'- guUCCGcgaCUAGCUGCUCa-------CGGa-GG- -5'
30409 5' -55.3 NC_006548.1 + 4570 0.66 0.585054
Target:  5'- -cAGGCGCUGAUCGAgcgccUGAGcaccaGCggCCg -3'
miRNA:   3'- guUCCGCGACUAGCU-----GCUCa----CGgaGG- -5'
30409 5' -55.3 NC_006548.1 + 32206 0.68 0.487066
Target:  5'- uCGAGGCGCUGGcCGAgcccaGGGUGaUgUCCu -3'
miRNA:   3'- -GUUCCGCGACUaGCUg----CUCAC-GgAGG- -5'
30409 5' -55.3 NC_006548.1 + 33392 0.69 0.456092
Target:  5'- --uGGUGCUGGUCGACacAGUGgCUgCg -3'
miRNA:   3'- guuCCGCGACUAGCUGc-UCACgGAgG- -5'
30409 5' -55.3 NC_006548.1 + 16059 0.69 0.446004
Target:  5'- -uGGGCGCUGGgucUGGCGAuccaugcUGCUUCCg -3'
miRNA:   3'- guUCCGCGACUa--GCUGCUc------ACGGAGG- -5'
30409 5' -55.3 NC_006548.1 + 12589 0.7 0.370106
Target:  5'- -cAGGCcaGCUGGUCGGCGccGGaUGCCgaggCCa -3'
miRNA:   3'- guUCCG--CGACUAGCUGC--UC-ACGGa---GG- -5'
30409 5' -55.3 NC_006548.1 + 8191 0.7 0.370106
Target:  5'- uCAuGGCGCaGuUCGGCGAcgGCCUCCc -3'
miRNA:   3'- -GUuCCGCGaCuAGCUGCUcaCGGAGG- -5'
30409 5' -55.3 NC_006548.1 + 14473 0.71 0.35256
Target:  5'- gCGAGGCGCUGA-CGGCGA-UGa-UCCa -3'
miRNA:   3'- -GUUCCGCGACUaGCUGCUcACggAGG- -5'
30409 5' -55.3 NC_006548.1 + 4771 0.71 0.335611
Target:  5'- -cAGGUGCuUGAgcgUGGCGAucggcaggcuguGUGCCUCCu -3'
miRNA:   3'- guUCCGCG-ACUa--GCUGCU------------CACGGAGG- -5'
30409 5' -55.3 NC_006548.1 + 2905 1.12 0.000367
Target:  5'- cCAAGGCGCUGAUCGACGAGUGCCUCCa -3'
miRNA:   3'- -GUUCCGCGACUAGCUGCUCACGGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.