Results 41 - 60 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 15763 | 0.69 | 0.531758 |
Target: 5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3' miRNA: 3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 15545 | 0.66 | 0.676887 |
Target: 5'- gCUGGAaagacuccUCGUCAGCAcaGC-CCGCCCg -3' miRNA: 3'- gGACCUac------GGCAGUUGU--UGcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 15226 | 0.69 | 0.51017 |
Target: 5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3' miRNA: 3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 14536 | 0.71 | 0.380806 |
Target: 5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3' miRNA: 3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 14455 | 0.67 | 0.654459 |
Target: 5'- gCUGGcacgaauUGCCGcCAGC--CGCCGCuCCa -3' miRNA: 3'- gGACCu------ACGGCaGUUGuuGCGGUG-GG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13647 | 0.71 | 0.418295 |
Target: 5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3' miRNA: 3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13468 | 0.66 | 0.676887 |
Target: 5'- gCCaGGAUGuCCGcCGGaguGACGCCGCUUu -3' miRNA: 3'- -GGaCCUAC-GGCaGUUg--UUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13277 | 0.72 | 0.345629 |
Target: 5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3' miRNA: 3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13117 | 0.68 | 0.594834 |
Target: 5'- gCCUGGGcgcguucguuggugUGCUGcagcugCAgguugagcagcGCAGCGUCACCCu -3' miRNA: 3'- -GGACCU--------------ACGGCa-----GU-----------UGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11888 | 0.72 | 0.371791 |
Target: 5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3' miRNA: 3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11621 | 0.7 | 0.478507 |
Target: 5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3' miRNA: 3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 10356 | 0.66 | 0.695814 |
Target: 5'- aCUGGAUcuucuccuacuuccGCCaGUUAACAGCGaaGCCa -3' miRNA: 3'- gGACCUA--------------CGG-CAGUUGUUGCggUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 9072 | 0.69 | 0.487908 |
Target: 5'- aCCUGGGUGCC-------GCGCuCGCCCu -3' miRNA: 3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8861 | 0.66 | 0.703557 |
Target: 5'- aCCUGGcgGCCGcccacggaaagcuccUCAucgacaucccgACuggucgcacGACGUCGCCCa -3' miRNA: 3'- -GGACCuaCGGC---------------AGU-----------UG---------UUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8690 | 0.69 | 0.542676 |
Target: 5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3' miRNA: 3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8250 | 0.69 | 0.488957 |
Target: 5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3' miRNA: 3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7624 | 0.7 | 0.44784 |
Target: 5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3' miRNA: 3'- gGACCua-CGGCAGUugUugcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7433 | 0.73 | 0.328936 |
Target: 5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3' miRNA: 3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 5540 | 0.67 | 0.609429 |
Target: 5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3' miRNA: 3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 5350 | 0.66 | 0.665689 |
Target: 5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3' miRNA: 3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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