miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 21295 0.73 0.320815
Target:  5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3'
miRNA:   3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21399 0.73 0.326483
Target:  5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3'
miRNA:   3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21666 0.66 0.710166
Target:  5'- cCCUGGucgGCCG-CAaguccaagccgaACGaaguagaguucaGCGCCACCg -3'
miRNA:   3'- -GGACCua-CGGCaGU------------UGU------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21744 0.71 0.399269
Target:  5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3'
miRNA:   3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5'
30412 3' -54.2 NC_006548.1 + 22011 0.72 0.345629
Target:  5'- gCUGG--GCCGUC-GCAcCGCCACCa -3'
miRNA:   3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 23777 0.78 0.155696
Target:  5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3'
miRNA:   3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 24042 0.7 0.457944
Target:  5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3'
miRNA:   3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 25738 0.7 0.437862
Target:  5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3'
miRNA:   3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5'
30412 3' -54.2 NC_006548.1 + 26339 0.68 0.575835
Target:  5'- gCUGGAUGUCgGUCAGCGuuuCCGgCCg -3'
miRNA:   3'- gGACCUACGG-CAGUUGUugcGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 26407 0.66 0.710166
Target:  5'- gCCUGGAagaaacaCUGUCGGCGGC-UCACCUg -3'
miRNA:   3'- -GGACCUac-----GGCAGUUGUUGcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 27122 0.71 0.389966
Target:  5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3'
miRNA:   3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 27295 0.72 0.362043
Target:  5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3'
miRNA:   3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 27301 0.68 0.585879
Target:  5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3'
miRNA:   3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27562 0.69 0.542676
Target:  5'- cCCUGGAc-CCGUCGAauuGCaGCC-CCCa -3'
miRNA:   3'- -GGACCUacGGCAGUUgu-UG-CGGuGGG- -5'
30412 3' -54.2 NC_006548.1 + 27696 0.69 0.531758
Target:  5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3'
miRNA:   3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 28350 0.71 0.418295
Target:  5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3'
miRNA:   3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 28535 0.69 0.531758
Target:  5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3'
miRNA:   3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28766 0.72 0.371791
Target:  5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3'
miRNA:   3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 29498 0.71 0.428013
Target:  5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3'
miRNA:   3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 30339 0.67 0.631944
Target:  5'- cCCUGGccuggGCgG-CAcCGACGCCAUCUa -3'
miRNA:   3'- -GGACCua---CGgCaGUuGUUGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.