miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 11621 0.7 0.478507
Target:  5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3'
miRNA:   3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 11888 0.72 0.371791
Target:  5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3'
miRNA:   3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 13117 0.68 0.594834
Target:  5'- gCCUGGGcgcguucguuggugUGCUGcagcugCAgguugagcagcGCAGCGUCACCCu -3'
miRNA:   3'- -GGACCU--------------ACGGCa-----GU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 13277 0.72 0.345629
Target:  5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3'
miRNA:   3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 13468 0.66 0.676887
Target:  5'- gCCaGGAUGuCCGcCGGaguGACGCCGCUUu -3'
miRNA:   3'- -GGaCCUAC-GGCaGUUg--UUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 13647 0.71 0.418295
Target:  5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3'
miRNA:   3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 14455 0.67 0.654459
Target:  5'- gCUGGcacgaauUGCCGcCAGC--CGCCGCuCCa -3'
miRNA:   3'- gGACCu------ACGGCaGUUGuuGCGGUG-GG- -5'
30412 3' -54.2 NC_006548.1 + 14536 0.71 0.380806
Target:  5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3'
miRNA:   3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 15226 0.69 0.51017
Target:  5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3'
miRNA:   3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 15545 0.66 0.676887
Target:  5'- gCUGGAaagacuccUCGUCAGCAcaGC-CCGCCCg -3'
miRNA:   3'- gGACCUac------GGCAGUUGU--UGcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 15763 0.69 0.531758
Target:  5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3'
miRNA:   3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 16494 0.67 0.651085
Target:  5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3'
miRNA:   3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 16848 0.67 0.616179
Target:  5'- uCCUGGAcaaguucgguaUGCCcacggcgGUCGGCcgcuaugacgacaaGAcCGCCACCCc -3'
miRNA:   3'- -GGACCU-----------ACGG-------CAGUUG--------------UU-GCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 17851 0.66 0.676887
Target:  5'- --aGGAccgGUCGUUAGCcGCGCCACg- -3'
miRNA:   3'- ggaCCUa--CGGCAGUUGuUGCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 18062 0.66 0.665689
Target:  5'- uUCUGGAUGUacaaccaCAGCGAUGCCGucgaacaucCCCg -3'
miRNA:   3'- -GGACCUACGgca----GUUGUUGCGGU---------GGG- -5'
30412 3' -54.2 NC_006548.1 + 18477 0.69 0.499514
Target:  5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3'
miRNA:   3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 19072 0.67 0.654459
Target:  5'- cCCUGGcgGCCGggAAau-CGCCAguUCCg -3'
miRNA:   3'- -GGACCuaCGGCagUUguuGCGGU--GGG- -5'
30412 3' -54.2 NC_006548.1 + 20861 0.68 0.575835
Target:  5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3'
miRNA:   3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5'
30412 3' -54.2 NC_006548.1 + 21261 0.71 0.389966
Target:  5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3'
miRNA:   3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21283 0.69 0.495279
Target:  5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3'
miRNA:   3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.