miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 544 0.66 0.68804
Target:  5'- aUUGGAcgcUGCCGccgccauccuuUCGGCAGCuguuccaggccgGCCGCCUg -3'
miRNA:   3'- gGACCU---ACGGC-----------AGUUGUUG------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 623 0.68 0.562506
Target:  5'- gCCUGGAacagcUGCCGaaaggauggcggCGGCAGCGUCcaauccucaagGCCCu -3'
miRNA:   3'- -GGACCU-----ACGGCa-----------GUUGUUGCGG-----------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 1047 0.66 0.68804
Target:  5'- gCCaUGGAacaccuccaUGCCauGUCGACGAC-CCAgCCg -3'
miRNA:   3'- -GG-ACCU---------ACGG--CAGUUGUUGcGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 1124 0.68 0.586997
Target:  5'- gCCUGGccgucUGCgCGgcCAGCAACGCCugUg -3'
miRNA:   3'- -GGACCu----ACG-GCa-GUUGUUGCGGugGg -5'
30412 3' -54.2 NC_006548.1 + 1432 0.66 0.686927
Target:  5'- uCCUGGGccuccUGCCGcuuuacgUCAGCAucGCGCCgaggcggaucGCCg -3'
miRNA:   3'- -GGACCU-----ACGGC-------AGUUGU--UGCGG----------UGGg -5'
30412 3' -54.2 NC_006548.1 + 2057 0.72 0.345629
Target:  5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3'
miRNA:   3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2234 0.74 0.254485
Target:  5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3'
miRNA:   3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 2406 0.71 0.389966
Target:  5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3'
miRNA:   3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 4320 1.15 0.000371
Target:  5'- gCCUGGAUGCCGUCAACAACGCCACCCg -3'
miRNA:   3'- -GGACCUACGGCAGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 4477 0.66 0.710166
Target:  5'- aUCUGGcgGUGCaUGUCGGCGAa-CCGCUCg -3'
miRNA:   3'- -GGACC--UACG-GCAGUUGUUgcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 4529 0.76 0.191264
Target:  5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3'
miRNA:   3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 5350 0.66 0.665689
Target:  5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3'
miRNA:   3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5'
30412 3' -54.2 NC_006548.1 + 5540 0.67 0.609429
Target:  5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3'
miRNA:   3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 7433 0.73 0.328936
Target:  5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3'
miRNA:   3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 7624 0.7 0.44784
Target:  5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3'
miRNA:   3'- gGACCua-CGGCAGUugUugcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 8250 0.69 0.488957
Target:  5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3'
miRNA:   3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 8690 0.69 0.542676
Target:  5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3'
miRNA:   3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 8861 0.66 0.703557
Target:  5'- aCCUGGcgGCCGcccacggaaagcuccUCAucgacaucccgACuggucgcacGACGUCGCCCa -3'
miRNA:   3'- -GGACCuaCGGC---------------AGU-----------UG---------UUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 9072 0.69 0.487908
Target:  5'- aCCUGGGUGCC-------GCGCuCGCCCu -3'
miRNA:   3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 10356 0.66 0.695814
Target:  5'- aCUGGAUcuucuccuacuuccGCCaGUUAACAGCGaaGCCa -3'
miRNA:   3'- gGACCUA--------------CGG-CAGUUGUUGCggUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.