Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 544 | 0.66 | 0.68804 |
Target: 5'- aUUGGAcgcUGCCGccgccauccuuUCGGCAGCuguuccaggccgGCCGCCUg -3' miRNA: 3'- gGACCU---ACGGC-----------AGUUGUUG------------CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 623 | 0.68 | 0.562506 |
Target: 5'- gCCUGGAacagcUGCCGaaaggauggcggCGGCAGCGUCcaauccucaagGCCCu -3' miRNA: 3'- -GGACCU-----ACGGCa-----------GUUGUUGCGG-----------UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1047 | 0.66 | 0.68804 |
Target: 5'- gCCaUGGAacaccuccaUGCCauGUCGACGAC-CCAgCCg -3' miRNA: 3'- -GG-ACCU---------ACGG--CAGUUGUUGcGGUgGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1124 | 0.68 | 0.586997 |
Target: 5'- gCCUGGccgucUGCgCGgcCAGCAACGCCugUg -3' miRNA: 3'- -GGACCu----ACG-GCa-GUUGUUGCGGugGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 1432 | 0.66 | 0.686927 |
Target: 5'- uCCUGGGccuccUGCCGcuuuacgUCAGCAucGCGCCgaggcggaucGCCg -3' miRNA: 3'- -GGACCU-----ACGGC-------AGUUGU--UGCGG----------UGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2057 | 0.72 | 0.345629 |
Target: 5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3' miRNA: 3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2234 | 0.74 | 0.254485 |
Target: 5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3' miRNA: 3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2406 | 0.71 | 0.389966 |
Target: 5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3' miRNA: 3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4320 | 1.15 | 0.000371 |
Target: 5'- gCCUGGAUGCCGUCAACAACGCCACCCg -3' miRNA: 3'- -GGACCUACGGCAGUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4477 | 0.66 | 0.710166 |
Target: 5'- aUCUGGcgGUGCaUGUCGGCGAa-CCGCUCg -3' miRNA: 3'- -GGACC--UACG-GCAGUUGUUgcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4529 | 0.76 | 0.191264 |
Target: 5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3' miRNA: 3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 5350 | 0.66 | 0.665689 |
Target: 5'- gCCUGGc-GCaCGUCAuCAaacugcGCGCCaugGCCCa -3' miRNA: 3'- -GGACCuaCG-GCAGUuGU------UGCGG---UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 5540 | 0.67 | 0.609429 |
Target: 5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3' miRNA: 3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7433 | 0.73 | 0.328936 |
Target: 5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3' miRNA: 3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7624 | 0.7 | 0.44784 |
Target: 5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3' miRNA: 3'- gGACCua-CGGCAGUugUugcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8250 | 0.69 | 0.488957 |
Target: 5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3' miRNA: 3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8690 | 0.69 | 0.542676 |
Target: 5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3' miRNA: 3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8861 | 0.66 | 0.703557 |
Target: 5'- aCCUGGcgGCCGcccacggaaagcuccUCAucgacaucccgACuggucgcacGACGUCGCCCa -3' miRNA: 3'- -GGACCuaCGGC---------------AGU-----------UG---------UUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 9072 | 0.69 | 0.487908 |
Target: 5'- aCCUGGGUGCC-------GCGCuCGCCCu -3' miRNA: 3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 10356 | 0.66 | 0.695814 |
Target: 5'- aCUGGAUcuucuccuacuuccGCCaGUUAACAGCGaaGCCa -3' miRNA: 3'- gGACCUA--------------CGG-CAGUUGUUGCggUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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