miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 4320 1.15 0.000371
Target:  5'- gCCUGGAUGCCGUCAACAACGCCACCCg -3'
miRNA:   3'- -GGACCUACGGCAGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 23777 0.78 0.155696
Target:  5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3'
miRNA:   3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 32841 0.77 0.183521
Target:  5'- gCUGGAUGuCCGgccacacCGGCAGCGCCcagauccGCCCg -3'
miRNA:   3'- gGACCUAC-GGCa------GUUGUUGCGG-------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 4529 0.76 0.191264
Target:  5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3'
miRNA:   3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 2234 0.74 0.254485
Target:  5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3'
miRNA:   3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 36050 0.74 0.261261
Target:  5'- aCCUGGAgcuUGCggauagccgaCGUCGACAcguugcagucgcGCGCCGCCa -3'
miRNA:   3'- -GGACCU---ACG----------GCAGUUGU------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 37407 0.73 0.304253
Target:  5'- gCCUGGccGCUaGUCGGCAGCGUggcgacgCGCCCc -3'
miRNA:   3'- -GGACCuaCGG-CAGUUGUUGCG-------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21295 0.73 0.320815
Target:  5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3'
miRNA:   3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21399 0.73 0.326483
Target:  5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3'
miRNA:   3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 7433 0.73 0.328936
Target:  5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3'
miRNA:   3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2057 0.72 0.345629
Target:  5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3'
miRNA:   3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 22011 0.72 0.345629
Target:  5'- gCUGG--GCCGUC-GCAcCGCCACCa -3'
miRNA:   3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 13277 0.72 0.345629
Target:  5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3'
miRNA:   3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27295 0.72 0.362043
Target:  5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3'
miRNA:   3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28766 0.72 0.371791
Target:  5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3'
miRNA:   3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 11888 0.72 0.371791
Target:  5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3'
miRNA:   3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 14536 0.71 0.380806
Target:  5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3'
miRNA:   3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 27122 0.71 0.389966
Target:  5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3'
miRNA:   3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21261 0.71 0.389966
Target:  5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3'
miRNA:   3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2406 0.71 0.389966
Target:  5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3'
miRNA:   3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.