miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 27301 0.68 0.585879
Target:  5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3'
miRNA:   3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 7624 0.7 0.44784
Target:  5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3'
miRNA:   3'- gGACCua-CGGCAGUugUugcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35361 0.7 0.468167
Target:  5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3'
miRNA:   3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 11621 0.7 0.478507
Target:  5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3'
miRNA:   3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 18477 0.69 0.499514
Target:  5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3'
miRNA:   3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 27696 0.69 0.531758
Target:  5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3'
miRNA:   3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 15763 0.69 0.531758
Target:  5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3'
miRNA:   3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 28535 0.69 0.531758
Target:  5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3'
miRNA:   3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 20861 0.68 0.575835
Target:  5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3'
miRNA:   3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5'
30412 3' -54.2 NC_006548.1 + 25738 0.7 0.437862
Target:  5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3'
miRNA:   3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5'
30412 3' -54.2 NC_006548.1 + 21744 0.71 0.399269
Target:  5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3'
miRNA:   3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21261 0.71 0.389966
Target:  5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3'
miRNA:   3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2234 0.74 0.254485
Target:  5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3'
miRNA:   3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21295 0.73 0.320815
Target:  5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3'
miRNA:   3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2057 0.72 0.345629
Target:  5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3'
miRNA:   3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 13277 0.72 0.345629
Target:  5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3'
miRNA:   3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 22011 0.72 0.345629
Target:  5'- gCUGG--GCCGUC-GCAcCGCCACCa -3'
miRNA:   3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 11888 0.72 0.371791
Target:  5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3'
miRNA:   3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28766 0.72 0.371791
Target:  5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3'
miRNA:   3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2406 0.71 0.389966
Target:  5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3'
miRNA:   3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.