Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 2234 | 0.74 | 0.254485 |
Target: 5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3' miRNA: 3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 20861 | 0.68 | 0.575835 |
Target: 5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3' miRNA: 3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 28535 | 0.69 | 0.531758 |
Target: 5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3' miRNA: 3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 15763 | 0.69 | 0.531758 |
Target: 5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3' miRNA: 3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 27696 | 0.69 | 0.531758 |
Target: 5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3' miRNA: 3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18477 | 0.69 | 0.499514 |
Target: 5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3' miRNA: 3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11621 | 0.7 | 0.478507 |
Target: 5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3' miRNA: 3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 35361 | 0.7 | 0.468167 |
Target: 5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3' miRNA: 3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7624 | 0.7 | 0.44784 |
Target: 5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3' miRNA: 3'- gGACCua-CGGCAGUugUugcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 25738 | 0.7 | 0.437862 |
Target: 5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3' miRNA: 3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21744 | 0.71 | 0.399269 |
Target: 5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3' miRNA: 3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21261 | 0.71 | 0.389966 |
Target: 5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3' miRNA: 3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2406 | 0.71 | 0.389966 |
Target: 5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3' miRNA: 3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 28766 | 0.72 | 0.371791 |
Target: 5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3' miRNA: 3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11888 | 0.72 | 0.371791 |
Target: 5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3' miRNA: 3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 22011 | 0.72 | 0.345629 |
Target: 5'- gCUGG--GCCGUC-GCAcCGCCACCa -3' miRNA: 3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13277 | 0.72 | 0.345629 |
Target: 5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3' miRNA: 3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2057 | 0.72 | 0.345629 |
Target: 5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3' miRNA: 3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21295 | 0.73 | 0.320815 |
Target: 5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3' miRNA: 3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4529 | 0.76 | 0.191264 |
Target: 5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3' miRNA: 3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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