miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 4320 1.15 0.000371
Target:  5'- gCCUGGAUGCCGUCAACAACGCCACCCg -3'
miRNA:   3'- -GGACCUACGGCAGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 15226 0.69 0.51017
Target:  5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3'
miRNA:   3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 31757 0.69 0.520921
Target:  5'- gCCgggGGAUGuUCGUCGuguagucgaACGGCaGCCACUCg -3'
miRNA:   3'- -GGa--CCUAC-GGCAGU---------UGUUG-CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 4477 0.66 0.710166
Target:  5'- aUCUGGcgGUGCaUGUCGGCGAa-CCGCUCg -3'
miRNA:   3'- -GGACC--UACG-GCAGUUGUUgcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 37407 0.73 0.304253
Target:  5'- gCCUGGccGCUaGUCGGCAGCGUggcgacgCGCCCc -3'
miRNA:   3'- -GGACCuaCGG-CAGUUGUUGCG-------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21399 0.73 0.326483
Target:  5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3'
miRNA:   3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 27295 0.72 0.362043
Target:  5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3'
miRNA:   3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 14536 0.71 0.380806
Target:  5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3'
miRNA:   3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 28350 0.71 0.418295
Target:  5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3'
miRNA:   3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 21283 0.69 0.495279
Target:  5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3'
miRNA:   3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 24042 0.7 0.457944
Target:  5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3'
miRNA:   3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 13647 0.71 0.418295
Target:  5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3'
miRNA:   3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 23777 0.78 0.155696
Target:  5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3'
miRNA:   3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 9072 0.69 0.487908
Target:  5'- aCCUGGGUGCC-------GCGCuCGCCCu -3'
miRNA:   3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 32841 0.77 0.183521
Target:  5'- gCUGGAUGuCCGgccacacCGGCAGCGCCcagauccGCCCg -3'
miRNA:   3'- gGACCUAC-GGCa------GUUGUUGCGG-------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27122 0.71 0.389966
Target:  5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3'
miRNA:   3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 8250 0.69 0.488957
Target:  5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3'
miRNA:   3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 34582 0.69 0.520921
Target:  5'- --aGGGUcGCCGUCgAACGGCGaCUugCCc -3'
miRNA:   3'- ggaCCUA-CGGCAG-UUGUUGC-GGugGG- -5'
30412 3' -54.2 NC_006548.1 + 36050 0.74 0.261261
Target:  5'- aCCUGGAgcuUGCggauagccgaCGUCGACAcguugcagucgcGCGCCGCCa -3'
miRNA:   3'- -GGACCU---ACG----------GCAGUUGU------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 7433 0.73 0.328936
Target:  5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3'
miRNA:   3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.