miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 21744 0.71 0.399269
Target:  5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3'
miRNA:   3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5'
30412 3' -54.2 NC_006548.1 + 13647 0.71 0.418295
Target:  5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3'
miRNA:   3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28350 0.71 0.418295
Target:  5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3'
miRNA:   3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 29498 0.71 0.428013
Target:  5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3'
miRNA:   3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 25738 0.7 0.437862
Target:  5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3'
miRNA:   3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5'
30412 3' -54.2 NC_006548.1 + 7624 0.7 0.44784
Target:  5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3'
miRNA:   3'- gGACCua-CGGCAGUugUugcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 24042 0.7 0.457944
Target:  5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3'
miRNA:   3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 35361 0.7 0.468167
Target:  5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3'
miRNA:   3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 11621 0.7 0.478507
Target:  5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3'
miRNA:   3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 9072 0.69 0.487908
Target:  5'- aCCUGGGUGCC-------GCGCuCGCCCu -3'
miRNA:   3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 8250 0.69 0.488957
Target:  5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3'
miRNA:   3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21283 0.69 0.495279
Target:  5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3'
miRNA:   3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 18477 0.69 0.499514
Target:  5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3'
miRNA:   3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 15226 0.69 0.51017
Target:  5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3'
miRNA:   3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 34582 0.69 0.520921
Target:  5'- --aGGGUcGCCGUCgAACGGCGaCUugCCc -3'
miRNA:   3'- ggaCCUA-CGGCAG-UUGUUGC-GGugGG- -5'
30412 3' -54.2 NC_006548.1 + 31757 0.69 0.520921
Target:  5'- gCCgggGGAUGuUCGUCGuguagucgaACGGCaGCCACUCg -3'
miRNA:   3'- -GGa--CCUAC-GGCAGU---------UGUUG-CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 27696 0.69 0.531758
Target:  5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3'
miRNA:   3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 15763 0.69 0.531758
Target:  5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3'
miRNA:   3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 28535 0.69 0.531758
Target:  5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3'
miRNA:   3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 8690 0.69 0.542676
Target:  5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3'
miRNA:   3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.