miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 16494 0.67 0.651085
Target:  5'- aCCUGGAgcagcaGCUG-CAGCGcgugggcugggaccGCGUCACCa -3'
miRNA:   3'- -GGACCUa-----CGGCaGUUGU--------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 37957 0.67 0.643207
Target:  5'- gCUGGGUGCCGgCggUgagguAgGCCguGCCCg -3'
miRNA:   3'- gGACCUACGGCaGuuGu----UgCGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 5540 0.67 0.609429
Target:  5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3'
miRNA:   3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35283 0.68 0.594834
Target:  5'- uCCgGGgcGCCGaacaUgacguccagcggccCAACGAUGCCGCCCu -3'
miRNA:   3'- -GGaCCuaCGGC----A--------------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 623 0.68 0.562506
Target:  5'- gCCUGGAacagcUGCCGaaaggauggcggCGGCAGCGUCcaauccucaagGCCCu -3'
miRNA:   3'- -GGACCU-----ACGGCa-----------GUUGUUGCGG-----------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 26339 0.68 0.575835
Target:  5'- gCUGGAUGUCgGUCAGCGuuuCCGgCCg -3'
miRNA:   3'- gGACCUACGG-CAGUUGUugcGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 13117 0.68 0.594834
Target:  5'- gCCUGGGcgcguucguuggugUGCUGcagcugCAgguugagcagcGCAGCGUCACCCu -3'
miRNA:   3'- -GGACCU--------------ACGGCa-----GU-----------UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 1124 0.68 0.586997
Target:  5'- gCCUGGccgucUGCgCGgcCAGCAACGCCugUg -3'
miRNA:   3'- -GGACCu----ACG-GCa-GUUGUUGCGGugGg -5'
30412 3' -54.2 NC_006548.1 + 27301 0.68 0.585879
Target:  5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3'
miRNA:   3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 20861 0.68 0.575835
Target:  5'- cCCUGGAguucGCCGagGGCGACgGCCAg-- -3'
miRNA:   3'- -GGACCUa---CGGCagUUGUUG-CGGUggg -5'
30412 3' -54.2 NC_006548.1 + 27696 0.69 0.531758
Target:  5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3'
miRNA:   3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27562 0.69 0.542676
Target:  5'- cCCUGGAc-CCGUCGAauuGCaGCC-CCCa -3'
miRNA:   3'- -GGACCUacGGCAGUUgu-UG-CGGuGGG- -5'
30412 3' -54.2 NC_006548.1 + 8690 0.69 0.542676
Target:  5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3'
miRNA:   3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 31757 0.69 0.520921
Target:  5'- gCCgggGGAUGuUCGUCGuguagucgaACGGCaGCCACUCg -3'
miRNA:   3'- -GGa--CCUAC-GGCAGU---------UGUUG-CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 34582 0.69 0.520921
Target:  5'- --aGGGUcGCCGUCgAACGGCGaCUugCCc -3'
miRNA:   3'- ggaCCUA-CGGCAG-UUGUUGC-GGugGG- -5'
30412 3' -54.2 NC_006548.1 + 15226 0.69 0.51017
Target:  5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3'
miRNA:   3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 21283 0.69 0.495279
Target:  5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3'
miRNA:   3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 8250 0.69 0.488957
Target:  5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3'
miRNA:   3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 9072 0.69 0.487908
Target:  5'- aCCUGGGUGCC-------GCGCuCGCCCu -3'
miRNA:   3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 18477 0.69 0.499514
Target:  5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3'
miRNA:   3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.