Results 21 - 40 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 27122 | 0.71 | 0.389966 |
Target: 5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3' miRNA: 3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 29498 | 0.71 | 0.428013 |
Target: 5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3' miRNA: 3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 28350 | 0.71 | 0.418295 |
Target: 5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3' miRNA: 3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13647 | 0.71 | 0.418295 |
Target: 5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3' miRNA: 3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 25738 | 0.7 | 0.437862 |
Target: 5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3' miRNA: 3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7624 | 0.7 | 0.44784 |
Target: 5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3' miRNA: 3'- gGACCua-CGGCAGUugUugcGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 35361 | 0.7 | 0.468167 |
Target: 5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3' miRNA: 3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11621 | 0.7 | 0.478507 |
Target: 5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3' miRNA: 3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 24042 | 0.7 | 0.457944 |
Target: 5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3' miRNA: 3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 9072 | 0.69 | 0.487908 |
Target: 5'- aCCUGGGUGCC-------GCGCuCGCCCu -3' miRNA: 3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8250 | 0.69 | 0.488957 |
Target: 5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3' miRNA: 3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21283 | 0.69 | 0.495279 |
Target: 5'- gCU-GAUGCCGaUCAGCAGCGCagugcuaccggcaGCCUg -3' miRNA: 3'- gGAcCUACGGC-AGUUGUUGCGg------------UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 15226 | 0.69 | 0.51017 |
Target: 5'- uCCaGGAUG-CGUCcGCcGCGCUugCCg -3' miRNA: 3'- -GGaCCUACgGCAGuUGuUGCGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 34582 | 0.69 | 0.520921 |
Target: 5'- --aGGGUcGCCGUCgAACGGCGaCUugCCc -3' miRNA: 3'- ggaCCUA-CGGCAG-UUGUUGC-GGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 31757 | 0.69 | 0.520921 |
Target: 5'- gCCgggGGAUGuUCGUCGuguagucgaACGGCaGCCACUCg -3' miRNA: 3'- -GGa--CCUAC-GGCAGU---------UGUUG-CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 8690 | 0.69 | 0.542676 |
Target: 5'- gCCUGGAgucccugGCCuggCAccACGgaaACGUCACCCa -3' miRNA: 3'- -GGACCUa------CGGca-GU--UGU---UGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 27562 | 0.69 | 0.542676 |
Target: 5'- cCCUGGAc-CCGUCGAauuGCaGCC-CCCa -3' miRNA: 3'- -GGACCUacGGCAGUUgu-UG-CGGuGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 27696 | 0.69 | 0.531758 |
Target: 5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3' miRNA: 3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 18477 | 0.69 | 0.499514 |
Target: 5'- aCUGGGagcGCUGgcUCGAUAGCGUCGCCa -3' miRNA: 3'- gGACCUa--CGGC--AGUUGUUGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 15763 | 0.69 | 0.531758 |
Target: 5'- cCCUGGuuccagcGCUGUgAGCGcaucugcaucgACGCCACCg -3' miRNA: 3'- -GGACCua-----CGGCAgUUGU-----------UGCGGUGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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