Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 4320 | 1.15 | 0.000371 |
Target: 5'- gCCUGGAUGCCGUCAACAACGCCACCCg -3' miRNA: 3'- -GGACCUACGGCAGUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 23777 | 0.78 | 0.155696 |
Target: 5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3' miRNA: 3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 32841 | 0.77 | 0.183521 |
Target: 5'- gCUGGAUGuCCGgccacacCGGCAGCGCCcagauccGCCCg -3' miRNA: 3'- gGACCUAC-GGCa------GUUGUUGCGG-------UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 4529 | 0.76 | 0.191264 |
Target: 5'- gCCUGGAUGCCGcuugcguccaccaccUCgGACAACuGCUugCCa -3' miRNA: 3'- -GGACCUACGGC---------------AG-UUGUUG-CGGugGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2234 | 0.74 | 0.254485 |
Target: 5'- aCCUGGuaggcguaGCCgGUCAGCuccgGCGCCGCCg -3' miRNA: 3'- -GGACCua------CGG-CAGUUGu---UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 36050 | 0.74 | 0.261261 |
Target: 5'- aCCUGGAgcuUGCggauagccgaCGUCGACAcguugcagucgcGCGCCGCCa -3' miRNA: 3'- -GGACCU---ACG----------GCAGUUGU------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 7433 | 0.73 | 0.328936 |
Target: 5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3' miRNA: 3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21399 | 0.73 | 0.326483 |
Target: 5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3' miRNA: 3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 37407 | 0.73 | 0.304253 |
Target: 5'- gCCUGGccGCUaGUCGGCAGCGUggcgacgCGCCCc -3' miRNA: 3'- -GGACCuaCGG-CAGUUGUUGCG-------GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21295 | 0.73 | 0.320815 |
Target: 5'- gCCUGGc-GCCGgucgaguacggCGGCAACGUCACUCg -3' miRNA: 3'- -GGACCuaCGGCa----------GUUGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 11888 | 0.72 | 0.371791 |
Target: 5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3' miRNA: 3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 28766 | 0.72 | 0.371791 |
Target: 5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3' miRNA: 3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 27295 | 0.72 | 0.362043 |
Target: 5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3' miRNA: 3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 22011 | 0.72 | 0.345629 |
Target: 5'- gCUGG--GCCGUC-GCAcCGCCACCa -3' miRNA: 3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 13277 | 0.72 | 0.345629 |
Target: 5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3' miRNA: 3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2057 | 0.72 | 0.345629 |
Target: 5'- gCCUGGAU-CgCGUCGGCGAUGUugucgucgaCGCCCg -3' miRNA: 3'- -GGACCUAcG-GCAGUUGUUGCG---------GUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 2406 | 0.71 | 0.389966 |
Target: 5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3' miRNA: 3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21261 | 0.71 | 0.389966 |
Target: 5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3' miRNA: 3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 21744 | 0.71 | 0.399269 |
Target: 5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3' miRNA: 3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5' |
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30412 | 3' | -54.2 | NC_006548.1 | + | 14536 | 0.71 | 0.380806 |
Target: 5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3' miRNA: 3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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