miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 37957 0.67 0.643207
Target:  5'- gCUGGGUGCCGgCggUgagguAgGCCguGCCCg -3'
miRNA:   3'- gGACCUACGGCaGuuGu----UgCGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 37407 0.73 0.304253
Target:  5'- gCCUGGccGCUaGUCGGCAGCGUggcgacgCGCCCc -3'
miRNA:   3'- -GGACCuaCGG-CAGUUGUUGCG-------GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 36050 0.74 0.261261
Target:  5'- aCCUGGAgcuUGCggauagccgaCGUCGACAcguugcagucgcGCGCCGCCa -3'
miRNA:   3'- -GGACCU---ACG----------GCAGUUGU------------UGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 35506 0.66 0.68804
Target:  5'- aCUGGG-GCCGUggCAAgGAuCGCgGCCUg -3'
miRNA:   3'- gGACCUaCGGCA--GUUgUU-GCGgUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35361 0.7 0.468167
Target:  5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3'
miRNA:   3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35283 0.68 0.594834
Target:  5'- uCCgGGgcGCCGaacaUgacguccagcggccCAACGAUGCCGCCCu -3'
miRNA:   3'- -GGaCCuaCGGC----A--------------GUUGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 34582 0.69 0.520921
Target:  5'- --aGGGUcGCCGUCgAACGGCGaCUugCCc -3'
miRNA:   3'- ggaCCUA-CGGCAG-UUGUUGC-GGugGG- -5'
30412 3' -54.2 NC_006548.1 + 32841 0.77 0.183521
Target:  5'- gCUGGAUGuCCGgccacacCGGCAGCGCCcagauccGCCCg -3'
miRNA:   3'- gGACCUAC-GGCa------GUUGUUGCGG-------UGGG- -5'
30412 3' -54.2 NC_006548.1 + 32236 0.66 0.68804
Target:  5'- gCUGGuGUGCCG-C-AUAGCuGCCAgCCa -3'
miRNA:   3'- gGACC-UACGGCaGuUGUUG-CGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 31757 0.69 0.520921
Target:  5'- gCCgggGGAUGuUCGUCGuguagucgaACGGCaGCCACUCg -3'
miRNA:   3'- -GGa--CCUAC-GGCAGU---------UGUUG-CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 31649 0.66 0.68804
Target:  5'- gCCUGGAUgGCC-UgGAUGGCGgCCccucGCCCg -3'
miRNA:   3'- -GGACCUA-CGGcAgUUGUUGC-GG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 30339 0.67 0.631944
Target:  5'- cCCUGGccuggGCgG-CAcCGACGCCAUCUa -3'
miRNA:   3'- -GGACCua---CGgCaGUuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 29498 0.71 0.428013
Target:  5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3'
miRNA:   3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 28766 0.72 0.371791
Target:  5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3'
miRNA:   3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28535 0.69 0.531758
Target:  5'- uCCUGcucGgcGCCGgcCAggucGCGGCGCUACCCg -3'
miRNA:   3'- -GGAC---CuaCGGCa-GU----UGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28350 0.71 0.418295
Target:  5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3'
miRNA:   3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27696 0.69 0.531758
Target:  5'- gCCUGGA-GCUGcUCAACAccaGCCaaGCCUa -3'
miRNA:   3'- -GGACCUaCGGC-AGUUGUug-CGG--UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27562 0.69 0.542676
Target:  5'- cCCUGGAc-CCGUCGAauuGCaGCC-CCCa -3'
miRNA:   3'- -GGACCUacGGCAGUUgu-UG-CGGuGGG- -5'
30412 3' -54.2 NC_006548.1 + 27301 0.68 0.585879
Target:  5'- gCUGGGUGCCaUCGAuccgacuCAGCGCUcucucGCUCg -3'
miRNA:   3'- gGACCUACGGcAGUU-------GUUGCGG-----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 27295 0.72 0.362043
Target:  5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3'
miRNA:   3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.