Results 41 - 60 of 71 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 27562 | 0.69 | 0.542676 |
Target: 5'- cCCUGGAc-CCGUCGAauuGCaGCC-CCCa -3' miRNA: 3'- -GGACCUacGGCAGUUgu-UG-CGGuGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 623 | 0.68 | 0.562506 |
Target: 5'- gCCUGGAacagcUGCCGaaaggauggcggCGGCAGCGUCcaauccucaagGCCCu -3' miRNA: 3'- -GGACCU-----ACGGCa-----------GUUGUUGCGG-----------UGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 26339 | 0.68 | 0.575835 |
Target: 5'- gCUGGAUGUCgGUCAGCGuuuCCGgCCg -3' miRNA: 3'- gGACCUACGG-CAGUUGUugcGGUgGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 13117 | 0.68 | 0.594834 |
Target: 5'- gCCUGGGcgcguucguuggugUGCUGcagcugCAgguugagcagcGCAGCGUCACCCu -3' miRNA: 3'- -GGACCU--------------ACGGCa-----GU-----------UGUUGCGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 35283 | 0.68 | 0.594834 |
Target: 5'- uCCgGGgcGCCGaacaUgacguccagcggccCAACGAUGCCGCCCu -3' miRNA: 3'- -GGaCCuaCGGC----A--------------GUUGUUGCGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 5540 | 0.67 | 0.609429 |
Target: 5'- aCCUGGcucgaGCgGUCGaccugagcccgGCGGCGUCGCUCa -3' miRNA: 3'- -GGACCua---CGgCAGU-----------UGUUGCGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 9072 | 0.69 | 0.487908 |
Target: 5'- aCCUGGGUGCC-------GCGCuCGCCCu -3' miRNA: 3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 24042 | 0.7 | 0.457944 |
Target: 5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3' miRNA: 3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 29498 | 0.71 | 0.428013 |
Target: 5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3' miRNA: 3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 23777 | 0.78 | 0.155696 |
Target: 5'- gUUGGGUGaUCGugccaaguUCGGCGGCGCCGCCCa -3' miRNA: 3'- gGACCUAC-GGC--------AGUUGUUGCGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 32841 | 0.77 | 0.183521 |
Target: 5'- gCUGGAUGuCCGgccacacCGGCAGCGCCcagauccGCCCg -3' miRNA: 3'- gGACCUAC-GGCa------GUUGUUGCGG-------UGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 36050 | 0.74 | 0.261261 |
Target: 5'- aCCUGGAgcuUGCggauagccgaCGUCGACAcguugcagucgcGCGCCGCCa -3' miRNA: 3'- -GGACCU---ACG----------GCAGUUGU------------UGCGGUGGg -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 37407 | 0.73 | 0.304253 |
Target: 5'- gCCUGGccGCUaGUCGGCAGCGUggcgacgCGCCCc -3' miRNA: 3'- -GGACCuaCGG-CAGUUGUUGCG-------GUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 21399 | 0.73 | 0.326483 |
Target: 5'- cCCUGGGcgucgGCCGUCAGCGcaucaccgcgagugACGUUGCCg -3' miRNA: 3'- -GGACCUa----CGGCAGUUGU--------------UGCGGUGGg -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 7433 | 0.73 | 0.328936 |
Target: 5'- aCUGGGUGgggGcCGAUAugGCCGCCCu -3' miRNA: 3'- gGACCUACgg-CaGUUGUugCGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 27295 | 0.72 | 0.362043 |
Target: 5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3' miRNA: 3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 14536 | 0.71 | 0.380806 |
Target: 5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3' miRNA: 3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 27122 | 0.71 | 0.389966 |
Target: 5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3' miRNA: 3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 13647 | 0.71 | 0.418295 |
Target: 5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3' miRNA: 3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5' |
|||||||
30412 | 3' | -54.2 | NC_006548.1 | + | 28350 | 0.71 | 0.418295 |
Target: 5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3' miRNA: 3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home