miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30412 3' -54.2 NC_006548.1 + 8250 0.69 0.488957
Target:  5'- aCUGGAUagcGCCGcuaUCAACcagaacauCGCCACCa -3'
miRNA:   3'- gGACCUA---CGGC---AGUUGuu------GCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 9072 0.69 0.487908
Target:  5'- aCCUGGGUGCC-------GCGCuCGCCCu -3'
miRNA:   3'- -GGACCUACGGcaguuguUGCG-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 11621 0.7 0.478507
Target:  5'- --aGGAUGCCcaucaGUUGGCcagggAugGCCACCCu -3'
miRNA:   3'- ggaCCUACGG-----CAGUUG-----UugCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 35361 0.7 0.468167
Target:  5'- gCCUGGAUgaGCCGgUGGCGACGagCGCUCa -3'
miRNA:   3'- -GGACCUA--CGGCaGUUGUUGCg-GUGGG- -5'
30412 3' -54.2 NC_006548.1 + 24042 0.7 0.457944
Target:  5'- cCCUGGAcgaguugGCaGUCGcgAGCGCCugCCa -3'
miRNA:   3'- -GGACCUa------CGgCAGUugUUGCGGugGG- -5'
30412 3' -54.2 NC_006548.1 + 7624 0.7 0.44784
Target:  5'- gCUGGucgGCCGUCAugGuuuCCACCUg -3'
miRNA:   3'- gGACCua-CGGCAGUugUugcGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 25738 0.7 0.437862
Target:  5'- aCCUGG-UGCCGaacaGGCAACccaguGCCAgCCCa -3'
miRNA:   3'- -GGACCuACGGCag--UUGUUG-----CGGU-GGG- -5'
30412 3' -54.2 NC_006548.1 + 29498 0.71 0.428013
Target:  5'- uUCUGGGccagcUGCUGcgCGGCAACGUCGgCCa -3'
miRNA:   3'- -GGACCU-----ACGGCa-GUUGUUGCGGUgGG- -5'
30412 3' -54.2 NC_006548.1 + 28350 0.71 0.418295
Target:  5'- aCUUGG-UGaCGUUGACGACGCCcgcaGCCCc -3'
miRNA:   3'- -GGACCuACgGCAGUUGUUGCGG----UGGG- -5'
30412 3' -54.2 NC_006548.1 + 13647 0.71 0.418295
Target:  5'- uUCUGGAU-CUGguugagCAGCAGCuugccGCCGCCCg -3'
miRNA:   3'- -GGACCUAcGGCa-----GUUGUUG-----CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 21744 0.71 0.399269
Target:  5'- gCCUGGAcgcgccggUGCCGcaggcggauaUCGACAACG-CACCg -3'
miRNA:   3'- -GGACCU--------ACGGC----------AGUUGUUGCgGUGGg -5'
30412 3' -54.2 NC_006548.1 + 27122 0.71 0.389966
Target:  5'- uCCUGGGccgauUGuuGUugCAGCGAgGCCGCCa -3'
miRNA:   3'- -GGACCU-----ACggCA--GUUGUUgCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 21261 0.71 0.389966
Target:  5'- gCCgacGGUGCgGUCuuCGACGUCAUCCg -3'
miRNA:   3'- -GGac-CUACGgCAGuuGUUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 2406 0.71 0.389966
Target:  5'- cCCUGGcuucgccagccAUGCUGgcCAGC-ACGUCGCCCa -3'
miRNA:   3'- -GGACC-----------UACGGCa-GUUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 14536 0.71 0.380806
Target:  5'- aCUGGAUcaucGCCGUCAGCGccuCGCUGCg- -3'
miRNA:   3'- gGACCUA----CGGCAGUUGUu--GCGGUGgg -5'
30412 3' -54.2 NC_006548.1 + 11888 0.72 0.371791
Target:  5'- aCCUGGAgGUCGUaggugccuGGCuGCGCCGCUCg -3'
miRNA:   3'- -GGACCUaCGGCAg-------UUGuUGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 28766 0.72 0.371791
Target:  5'- cCCUGGAaGcCCGU--GCucGCGCCGCCUg -3'
miRNA:   3'- -GGACCUaC-GGCAguUGu-UGCGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 27295 0.72 0.362043
Target:  5'- cCUUGGcUGCCGccUCGGCAGCgcguugcucggucGCCGCCUg -3'
miRNA:   3'- -GGACCuACGGC--AGUUGUUG-------------CGGUGGG- -5'
30412 3' -54.2 NC_006548.1 + 22011 0.72 0.345629
Target:  5'- gCUGG--GCCGUC-GCAcCGCCACCa -3'
miRNA:   3'- gGACCuaCGGCAGuUGUuGCGGUGGg -5'
30412 3' -54.2 NC_006548.1 + 13277 0.72 0.345629
Target:  5'- gCUGGGUGCgCGacuUCAACAccgcccucgGCGCCgguuuGCCCg -3'
miRNA:   3'- gGACCUACG-GC---AGUUGU---------UGCGG-----UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.