miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30413 3' -58.5 NC_006548.1 + 4551 1.08 0.000319
Target:  5'- uGAGCACCAGCGGCCGCGACAAGACGAg -3'
miRNA:   3'- -CUCGUGGUCGCCGGCGCUGUUCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 17444 0.67 0.39678
Target:  5'- cGGCGCC-GUGGCCuCGGCcuGGGugGAc -3'
miRNA:   3'- cUCGUGGuCGCCGGcGCUG--UUCugCU- -5'
30413 3' -58.5 NC_006548.1 + 1128 0.67 0.387643
Target:  5'- -uGCGCCGGCugGGUCGuCGACAuGGCa- -3'
miRNA:   3'- cuCGUGGUCG--CCGGC-GCUGUuCUGcu -5'
30413 3' -58.5 NC_006548.1 + 21434 0.67 0.368913
Target:  5'- uGGCgGCCGGCGGCagaguCGCGGCAaccgcucgccccuGGGCGu -3'
miRNA:   3'- cUCG-UGGUCGCCG-----GCGCUGU-------------UCUGCu -5'
30413 3' -58.5 NC_006548.1 + 33862 0.67 0.361077
Target:  5'- uAGguCCAGCGGaUCGgGcCGAGGCGGa -3'
miRNA:   3'- cUCguGGUCGCC-GGCgCuGUUCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 7816 0.68 0.344084
Target:  5'- uGAGCugCcGCGaGCUGCG-CAAGGCu- -3'
miRNA:   3'- -CUCGugGuCGC-CGGCGCuGUUCUGcu -5'
30413 3' -58.5 NC_006548.1 + 1965 0.68 0.335806
Target:  5'- cGGGCACCA--GGCCGUGGCucGGCu- -3'
miRNA:   3'- -CUCGUGGUcgCCGGCGCUGuuCUGcu -5'
30413 3' -58.5 NC_006548.1 + 8010 0.68 0.327674
Target:  5'- uGAGCGCgCAGCGcGCCGgaUGAUGcAGGCGGc -3'
miRNA:   3'- -CUCGUG-GUCGC-CGGC--GCUGU-UCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 21523 0.68 0.304159
Target:  5'- aGGCuACCGGCagaacGGCCGgGGCGauguAGACGGa -3'
miRNA:   3'- cUCG-UGGUCG-----CCGGCgCUGU----UCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 3730 0.69 0.296614
Target:  5'- aGAGCGgCAGCGGCagaucCGACAGGAa-- -3'
miRNA:   3'- -CUCGUgGUCGCCGgc---GCUGUUCUgcu -5'
30413 3' -58.5 NC_006548.1 + 13393 0.7 0.231504
Target:  5'- uGAGCGCCGGCGGaaucggcgcgcgcucCUGCGGC-GGGCa- -3'
miRNA:   3'- -CUCGUGGUCGCC---------------GGCGCUGuUCUGcu -5'
30413 3' -58.5 NC_006548.1 + 36651 0.7 0.229071
Target:  5'- cGAGCACCGcgguGcCGGCCGCGGCGuuGAUc- -3'
miRNA:   3'- -CUCGUGGU----C-GCCGGCGCUGUu-CUGcu -5'
30413 3' -58.5 NC_006548.1 + 2922 0.71 0.217229
Target:  5'- cGAGCGCCugcaGGCGGCCaaGGCGcugaucGACGAg -3'
miRNA:   3'- -CUCGUGG----UCGCCGGcgCUGUu-----CUGCU- -5'
30413 3' -58.5 NC_006548.1 + 11733 0.71 0.195113
Target:  5'- cGGCGCCGG-GGuuGCGGCGAugacauGACGAu -3'
miRNA:   3'- cUCGUGGUCgCCggCGCUGUU------CUGCU- -5'
30413 3' -58.5 NC_006548.1 + 20031 0.72 0.174992
Target:  5'- uGAGCGCCGGaucguaGGUCGCGGCGaucuccugcaGGAUGGc -3'
miRNA:   3'- -CUCGUGGUCg-----CCGGCGCUGU----------UCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 18792 0.73 0.140227
Target:  5'- cGAGCAgCA-CGGCCuGCGGCuGGGCGAg -3'
miRNA:   3'- -CUCGUgGUcGCCGG-CGCUGuUCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 29906 0.73 0.15674
Target:  5'- cGGCGCUGuGCGGCaCGCGAC-GGGCGGc -3'
miRNA:   3'- cUCGUGGU-CGCCG-GCGCUGuUCUGCU- -5'
30413 3' -58.5 NC_006548.1 + 33194 0.66 0.425004
Target:  5'- -cGUACCAGCGGCUGCucgauguccugGAUA--ACGAa -3'
miRNA:   3'- cuCGUGGUCGCCGGCG-----------CUGUucUGCU- -5'
30413 3' -58.5 NC_006548.1 + 26329 0.66 0.415463
Target:  5'- aGAGCGCguuCGGCGGCCGgGuCGAuGGCc- -3'
miRNA:   3'- -CUCGUG---GUCGCCGGCgCuGUU-CUGcu -5'
30413 3' -58.5 NC_006548.1 + 16261 0.66 0.415463
Target:  5'- -cGcCACCAGUggcgacGGCCGCGACAucacuCGAc -3'
miRNA:   3'- cuC-GUGGUCG------CCGGCGCUGUucu--GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.