Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 14258 | 0.67 | 0.387643 |
Target: 5'- gGGGCGCCuGGCcgauGGCCGgaUGACccuGGACGAg -3' miRNA: 3'- -CUCGUGG-UCG----CCGGC--GCUGu--UCUGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 28888 | 0.67 | 0.384929 |
Target: 5'- cGGGcCACCggccaaaccgucgaGGCGGCCGgCGcCGAGAuCGAg -3' miRNA: 3'- -CUC-GUGG--------------UCGCCGGC-GCuGUUCU-GCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 16406 | 0.68 | 0.34492 |
Target: 5'- uGGgGCCAGCGGCaauuggccguagucaGCcGCGAGugGAa -3' miRNA: 3'- cUCgUGGUCGCCGg--------------CGcUGUUCugCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 2254 | 0.68 | 0.335806 |
Target: 5'- cAGCuCCGGCGccGCCGCG-CAGccGACGAa -3' miRNA: 3'- cUCGuGGUCGC--CGGCGCuGUU--CUGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 29604 | 0.68 | 0.31185 |
Target: 5'- gGAGCcgcaGCCAgucuuGCGGCCGCGAauGGGCu- -3' miRNA: 3'- -CUCG----UGGU-----CGCCGGCGCUguUCUGcu -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 35891 | 0.69 | 0.274853 |
Target: 5'- -cGCgGCCGGCGG-CGUGAUAAcGACGAc -3' miRNA: 3'- cuCG-UGGUCGCCgGCGCUGUU-CUGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 29654 | 0.69 | 0.274853 |
Target: 5'- -cGCuGCCAGCGGUgccggUGCGGCAGGuGCGGc -3' miRNA: 3'- cuCG-UGGUCGCCG-----GCGCUGUUC-UGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 35486 | 0.69 | 0.268579 |
Target: 5'- cGAGUGCCAGaccaaccgcgacuggGGCCGUGGCAAGgaucGCGGc -3' miRNA: 3'- -CUCGUGGUCg--------------CCGGCGCUGUUC----UGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 17096 | 0.69 | 0.261068 |
Target: 5'- aGGGCACCccCGGCCGUcugGGCAAcGAUGAu -3' miRNA: 3'- -CUCGUGGucGCCGGCG---CUGUU-CUGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 28542 | 0.7 | 0.254389 |
Target: 5'- cGGCGCCGGCcaGGUCGCGGCGcuacccGCGAc -3' miRNA: 3'- cUCGUGGUCG--CCGGCGCUGUuc----UGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 17964 | 0.7 | 0.254389 |
Target: 5'- cAGC-CUGGCGGgCGCGAgugaucuaCGAGACGAa -3' miRNA: 3'- cUCGuGGUCGCCgGCGCU--------GUUCUGCU- -5' |
|||||||
30413 | 3' | -58.5 | NC_006548.1 | + | 37544 | 0.72 | 0.170259 |
Target: 5'- cGGCGCCGGCGGuuG-GGCuGAGugGAc -3' miRNA: 3'- cUCGUGGUCGCCggCgCUG-UUCugCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home