Results 61 - 80 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 23801 | 0.69 | 0.496219 |
Target: 5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3' miRNA: 3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 24993 | 0.69 | 0.48658 |
Target: 5'- cGCCGaCGCCAACCuaGGUggcuucggucgcaucGUGCAaaaGGCCg -3' miRNA: 3'- -CGGUaGCGGUUGG--UCAa--------------CGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 36898 | 0.69 | 0.485514 |
Target: 5'- gGCgCAcCG-CAACCGGcUGCuGCAGGCCg -3' miRNA: 3'- -CG-GUaGCgGUUGGUCaACG-CGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 15159 | 0.69 | 0.50703 |
Target: 5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3' miRNA: 3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 30399 | 0.69 | 0.50703 |
Target: 5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3' miRNA: 3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 35027 | 0.69 | 0.50703 |
Target: 5'- -gCGUgGCUGACCAG--GCGCAGGgCCa -3' miRNA: 3'- cgGUAgCGGUUGGUCaaCGCGUUC-GG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 22644 | 0.69 | 0.496219 |
Target: 5'- cGCCGUccuggaguugaaCGCCGGCCAGUUG-GCcgucgaucAGGCUc -3' miRNA: 3'- -CGGUA------------GCGGUUGGUCAACgCG--------UUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32229 | 0.69 | 0.496219 |
Target: 5'- uGCCGcauagcUGCCAGCCaaGGUcgagGCGCuGGCCg -3' miRNA: 3'- -CGGUa-----GCGGUUGG--UCAa---CGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 6524 | 0.69 | 0.47492 |
Target: 5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3' miRNA: 3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32640 | 0.7 | 0.454086 |
Target: 5'- cGCCAUCaGC---CCAGUccgGCGCAaacGGCCa -3' miRNA: 3'- -CGGUAG-CGguuGGUCAa--CGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 17950 | 0.7 | 0.433758 |
Target: 5'- aGCCggaggGUgGCCAGCCuGgcggGCGCGAGUg -3' miRNA: 3'- -CGG-----UAgCGGUUGGuCaa--CGCGUUCGg -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 29418 | 0.7 | 0.423795 |
Target: 5'- aGCCgAUCGCUGGCCGacGUUGCcGCGcagcagcuGGCCc -3' miRNA: 3'- -CGG-UAGCGGUUGGU--CAACG-CGU--------UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 870 | 0.7 | 0.443857 |
Target: 5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3' miRNA: 3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 17056 | 0.71 | 0.41397 |
Target: 5'- aCCAUCGCCAaggucgggcucgGCCAGgUG-GCGAGUa -3' miRNA: 3'- cGGUAGCGGU------------UGGUCaACgCGUUCGg -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 33025 | 0.71 | 0.404286 |
Target: 5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3' miRNA: 3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 29957 | 0.71 | 0.394746 |
Target: 5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3' miRNA: 3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 6945 | 0.71 | 0.367016 |
Target: 5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3' miRNA: 3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32415 | 0.71 | 0.373365 |
Target: 5'- aGCCGUCGCCGccguuGCCguucgcggcgcugcAGgaGCGCAucuggacuguGGCCg -3' miRNA: 3'- -CGGUAGCGGU-----UGG--------------UCaaCGCGU----------UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 17822 | 0.71 | 0.376109 |
Target: 5'- cGCCGgggcaaaucgCGCCGACCuGGUgGCggaucuGCAAGCCa -3' miRNA: 3'- -CGGUa---------GCGGUUGG-UCAaCG------CGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 23399 | 0.71 | 0.394746 |
Target: 5'- gGCCAUCGCUcgcuACCuGUUGCacCAGGaCCg -3' miRNA: 3'- -CGGUAGCGGu---UGGuCAACGc-GUUC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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