miRNA display CGI


Results 61 - 80 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 17525 0.66 0.676509
Target:  5'- -gCAUCGCUucGGCCAGcUGCGgc-GCCa -3'
miRNA:   3'- cgGUAGCGG--UUGGUCaACGCguuCGG- -5'
30417 3' -53.8 NC_006548.1 + 13020 0.66 0.681055
Target:  5'- aGCCGUggaucaccacggcugCGCCGcacagcACCGcgcucaGCGCGAGCCa -3'
miRNA:   3'- -CGGUA---------------GCGGU------UGGUcaa---CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 18537 0.66 0.687857
Target:  5'- cGCUAUCgaGCCAGcgcucCCAGUcgguuugaaugGCGguGGCCa -3'
miRNA:   3'- -CGGUAG--CGGUU-----GGUCAa----------CGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 25325 0.66 0.687857
Target:  5'- cGCCGaUGauCCGAuCCAGcgGCGgCAAGCCu -3'
miRNA:   3'- -CGGUaGC--GGUU-GGUCaaCGC-GUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 802 0.66 0.687857
Target:  5'- uGCCGacaagaUCGCCAAgCAGaUGUucgGCGuGGCCa -3'
miRNA:   3'- -CGGU------AGCGGUUgGUCaACG---CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14323 0.66 0.699147
Target:  5'- gGUCAUCcgGCCAucgGCCAGgcGCcccucgauGUAGGCCc -3'
miRNA:   3'- -CGGUAG--CGGU---UGGUCaaCG--------CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 11766 0.66 0.699147
Target:  5'- aCCAgCGuCCAGCUGGUcaUGCGCGGcgcgcggcggcGCCg -3'
miRNA:   3'- cGGUaGC-GGUUGGUCA--ACGCGUU-----------CGG- -5'
30417 3' -53.8 NC_006548.1 + 30596 0.66 0.699147
Target:  5'- gGCCGUUGgCGaagaACCAGUaGgGCAucGGCUg -3'
miRNA:   3'- -CGGUAGCgGU----UGGUCAaCgCGU--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22644 0.69 0.496219
Target:  5'- cGCCGUccuggaguugaaCGCCGGCCAGUUG-GCcgucgaucAGGCUc -3'
miRNA:   3'- -CGGUA------------GCGGUUGGUCAACgCG--------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 5652 1.15 0.000293
Target:  5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 2151 0.79 0.126902
Target:  5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3'
miRNA:   3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 19389 0.74 0.262898
Target:  5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3'
miRNA:   3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 3628 0.73 0.284597
Target:  5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3'
miRNA:   3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16318 0.73 0.315694
Target:  5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3'
miRNA:   3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 6945 0.71 0.367016
Target:  5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3'
miRNA:   3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 29957 0.71 0.394746
Target:  5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3'
miRNA:   3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 33025 0.71 0.404286
Target:  5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3'
miRNA:   3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 870 0.7 0.443857
Target:  5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 32640 0.7 0.454086
Target:  5'- cGCCAUCaGC---CCAGUccgGCGCAaacGGCCa -3'
miRNA:   3'- -CGGUAG-CGguuGGUCAa--CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 6524 0.69 0.47492
Target:  5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3'
miRNA:   3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.