Results 41 - 60 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 23801 | 0.69 | 0.496219 |
Target: 5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3' miRNA: 3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 13308 | 0.69 | 0.496219 |
Target: 5'- cGCCGguUUGCCcGCCgcAGgaGCGCGcGCCg -3' miRNA: 3'- -CGGU--AGCGGuUGG--UCaaCGCGUuCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 12127 | 0.71 | 0.404286 |
Target: 5'- gGCCAagGCCGAUgAGauccCGCGGGCCg -3' miRNA: 3'- -CGGUagCGGUUGgUCaac-GCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 15578 | 0.67 | 0.630783 |
Target: 5'- cGUCGUCGUCGGCCGGaUUGCaCAuGUa -3' miRNA: 3'- -CGGUAGCGGUUGGUC-AACGcGUuCGg -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 30560 | 0.67 | 0.630783 |
Target: 5'- uCCAU-GCCAG-CAGUUGCacccGCGGGCUg -3' miRNA: 3'- cGGUAgCGGUUgGUCAACG----CGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 31706 | 0.67 | 0.630783 |
Target: 5'- cGCCAUCcagGCCAuCCAG--GCGCAAuaCg -3' miRNA: 3'- -CGGUAG---CGGUuGGUCaaCGCGUUcgG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 12458 | 0.67 | 0.619326 |
Target: 5'- aGCCAacggUCGUagguGACCAGcgcGCGCAGuGCCc -3' miRNA: 3'- -CGGU----AGCGg---UUGGUCaa-CGCGUU-CGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 25926 | 0.67 | 0.607881 |
Target: 5'- gGCCcgCGCgGGCCAGcagGCGguGacauccGCCa -3' miRNA: 3'- -CGGuaGCGgUUGGUCaa-CGCguU------CGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 1210 | 0.67 | 0.607881 |
Target: 5'- aGCCGgaugaUCGCCGcacaggcguuGCUGGccGCGCAgacGGCCa -3' miRNA: 3'- -CGGU-----AGCGGU----------UGGUCaaCGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 4313 | 0.67 | 0.607881 |
Target: 5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3' miRNA: 3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 25428 | 0.67 | 0.607881 |
Target: 5'- uCC-UUGCCAgGCCGugcGCGCAGGCCc -3' miRNA: 3'- cGGuAGCGGU-UGGUcaaCGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 29744 | 0.67 | 0.607881 |
Target: 5'- aGCCAgcCGCCAcuACCGGcaGCcGCAccuGCCg -3' miRNA: 3'- -CGGUa-GCGGU--UGGUCaaCG-CGUu--CGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 21014 | 0.67 | 0.604452 |
Target: 5'- cGCCGUCGCCGGauuucUCGGaaaaguccaccuguUUGgGCAguucGGCCa -3' miRNA: 3'- -CGGUAGCGGUU-----GGUC--------------AACgCGU----UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 33932 | 0.67 | 0.596459 |
Target: 5'- uCCAUCGUCGcucACCGGccGCGCGcgaaaGGUCa -3' miRNA: 3'- cGGUAGCGGU---UGGUCaaCGCGU-----UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 16039 | 0.68 | 0.58507 |
Target: 5'- aGCCGUCGUCuGCuUGGUgaccucGCGCAAGgCg -3' miRNA: 3'- -CGGUAGCGGuUG-GUCAa-----CGCGUUCgG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 37857 | 0.67 | 0.642241 |
Target: 5'- cGgCAUCGCCAGCCgcAGaUUGCagauGCCa -3' miRNA: 3'- -CgGUAGCGGUUGG--UC-AACGcguuCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 7679 | 0.67 | 0.642241 |
Target: 5'- aCCAUgacgGCCGACCAGc-GCGCGgcagAGCUg -3' miRNA: 3'- cGGUAg---CGGUUGGUCaaCGCGU----UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 16866 | 0.66 | 0.663975 |
Target: 5'- uGCCGUUGCgcuugaagaacacCGGCCAGUacagccaaUGgGCcAGGCCc -3' miRNA: 3'- -CGGUAGCG-------------GUUGGUCA--------ACgCG-UUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 29289 | 0.66 | 0.675372 |
Target: 5'- cGCUcgAUCGCgGccggaucGCCAGUUGCcuuGGCCa -3' miRNA: 3'- -CGG--UAGCGgU-------UGGUCAACGcguUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 30115 | 0.66 | 0.676509 |
Target: 5'- cGCCAUCGaCGAUCcGUUGCGgAucGUCa -3' miRNA: 3'- -CGGUAGCgGUUGGuCAACGCgUu-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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