miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 31706 0.67 0.630783
Target:  5'- cGCCAUCcagGCCAuCCAG--GCGCAAuaCg -3'
miRNA:   3'- -CGGUAG---CGGUuGGUCaaCGCGUUcgG- -5'
30417 3' -53.8 NC_006548.1 + 12458 0.67 0.619326
Target:  5'- aGCCAacggUCGUagguGACCAGcgcGCGCAGuGCCc -3'
miRNA:   3'- -CGGU----AGCGg---UUGGUCaa-CGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 25926 0.67 0.607881
Target:  5'- gGCCcgCGCgGGCCAGcagGCGguGacauccGCCa -3'
miRNA:   3'- -CGGuaGCGgUUGGUCaa-CGCguU------CGG- -5'
30417 3' -53.8 NC_006548.1 + 1210 0.67 0.607881
Target:  5'- aGCCGgaugaUCGCCGcacaggcguuGCUGGccGCGCAgacGGCCa -3'
miRNA:   3'- -CGGU-----AGCGGU----------UGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 4313 0.67 0.607881
Target:  5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3'
miRNA:   3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 25428 0.67 0.607881
Target:  5'- uCC-UUGCCAgGCCGugcGCGCAGGCCc -3'
miRNA:   3'- cGGuAGCGGU-UGGUcaaCGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 29744 0.67 0.607881
Target:  5'- aGCCAgcCGCCAcuACCGGcaGCcGCAccuGCCg -3'
miRNA:   3'- -CGGUa-GCGGU--UGGUCaaCG-CGUu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 3628 0.73 0.284597
Target:  5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3'
miRNA:   3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 19389 0.74 0.262898
Target:  5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3'
miRNA:   3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 2151 0.79 0.126902
Target:  5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3'
miRNA:   3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 5652 1.15 0.000293
Target:  5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30882 0.68 0.528943
Target:  5'- aGCCGUUGUCAAUCAGcUGCGgGAuUCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCaACGCgUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 3523 0.75 0.223555
Target:  5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3'
miRNA:   3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5'
30417 3' -53.8 NC_006548.1 + 13308 0.69 0.496219
Target:  5'- cGCCGguUUGCCcGCCgcAGgaGCGCGcGCCg -3'
miRNA:   3'- -CGGU--AGCGGuUGG--UCaaCGCGUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 23801 0.69 0.496219
Target:  5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3'
miRNA:   3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 24993 0.69 0.48658
Target:  5'- cGCCGaCGCCAACCuaGGUggcuucggucgcaucGUGCAaaaGGCCg -3'
miRNA:   3'- -CGGUaGCGGUUGG--UCAa--------------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 36898 0.69 0.485514
Target:  5'- gGCgCAcCG-CAACCGGcUGCuGCAGGCCg -3'
miRNA:   3'- -CG-GUaGCgGUUGGUCaACG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 246 0.69 0.485514
Target:  5'- aGCCAUCGUaccgcugcaguaUAugCAGUUccagGCGCuugcGAGCCa -3'
miRNA:   3'- -CGGUAGCG------------GUugGUCAA----CGCG----UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 5890 0.69 0.47492
Target:  5'- cGCUuucgaCGCCAuagGCCAGUUGgucaacagcuuUGCGGGCCu -3'
miRNA:   3'- -CGGua---GCGGU---UGGUCAAC-----------GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 17950 0.7 0.433758
Target:  5'- aGCCggaggGUgGCCAGCCuGgcggGCGCGAGUg -3'
miRNA:   3'- -CGG-----UAgCGGUUGGuCaa--CGCGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.