miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 30399 0.69 0.50703
Target:  5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3'
miRNA:   3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 6945 0.71 0.367016
Target:  5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3'
miRNA:   3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 29957 0.71 0.394746
Target:  5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3'
miRNA:   3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 33025 0.71 0.404286
Target:  5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3'
miRNA:   3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 870 0.7 0.443857
Target:  5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 32640 0.7 0.454086
Target:  5'- cGCCAUCaGC---CCAGUccgGCGCAaacGGCCa -3'
miRNA:   3'- -CGGUAG-CGguuGGUCAa--CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 6524 0.69 0.47492
Target:  5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3'
miRNA:   3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 32229 0.69 0.496219
Target:  5'- uGCCGcauagcUGCCAGCCaaGGUcgagGCGCuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUUGG--UCAa---CGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22644 0.69 0.496219
Target:  5'- cGCCGUccuggaguugaaCGCCGGCCAGUUG-GCcgucgaucAGGCUc -3'
miRNA:   3'- -CGGUA------------GCGGUUGGUCAACgCG--------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 35027 0.69 0.50703
Target:  5'- -gCGUgGCUGACCAG--GCGCAGGgCCa -3'
miRNA:   3'- cgGUAgCGGUUGGUCaaCGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 21014 0.67 0.604452
Target:  5'- cGCCGUCGCCGGauuucUCGGaaaaguccaccuguUUGgGCAguucGGCCa -3'
miRNA:   3'- -CGGUAGCGGUU-----GGUC--------------AACgCGU----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 15159 0.69 0.50703
Target:  5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3'
miRNA:   3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22790 0.68 0.528943
Target:  5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3'
miRNA:   3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 28589 0.68 0.528943
Target:  5'- gGCCggCGCCGAgCAGgacUGCGuCAcGCUg -3'
miRNA:   3'- -CGGuaGCGGUUgGUCa--ACGC-GUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 22971 0.68 0.533368
Target:  5'- gGCCcaacUCGCCGccgcgcgacugaaucGCCAGUUcGUaGCAAGCUg -3'
miRNA:   3'- -CGGu---AGCGGU---------------UGGUCAA-CG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 32899 0.68 0.550074
Target:  5'- cGCCAgcggguaUCGCacuCGACCGuuugUGCGCcGGCCg -3'
miRNA:   3'- -CGGU-------AGCG---GUUGGUca--ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 28842 0.68 0.551194
Target:  5'- uCCAggGUCGcCCAGgcgGCGCGAGCa -3'
miRNA:   3'- cGGUagCGGUuGGUCaa-CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 12591 0.68 0.562428
Target:  5'- aCCAg-GCCAGCUGGUcgGCGCcggaugccgAGGCCa -3'
miRNA:   3'- cGGUagCGGUUGGUCAa-CGCG---------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 36962 0.68 0.562428
Target:  5'- gGCC--UGCagCAGCCGGUUGCGguGcGCCc -3'
miRNA:   3'- -CGGuaGCG--GUUGGUCAACGCguU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 35316 0.68 0.581661
Target:  5'- aCCAUCGCCGccagucgaggauucACCGGUUGgucCGgGGcGCCg -3'
miRNA:   3'- cGGUAGCGGU--------------UGGUCAAC---GCgUU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.