miRNA display CGI


Results 21 - 40 of 94 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 36962 0.68 0.562428
Target:  5'- gGCC--UGCagCAGCCGGUUGCGguGcGCCc -3'
miRNA:   3'- -CGGuaGCG--GUUGGUCAACGCguU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 32899 0.68 0.550074
Target:  5'- cGCCAgcggguaUCGCacuCGACCGuuugUGCGCcGGCCg -3'
miRNA:   3'- -CGGU-------AGCG---GUUGGUca--ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 6524 0.69 0.47492
Target:  5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3'
miRNA:   3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 3628 0.73 0.284597
Target:  5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3'
miRNA:   3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 12458 0.67 0.619326
Target:  5'- aGCCAacggUCGUagguGACCAGcgcGCGCAGuGCCc -3'
miRNA:   3'- -CGGU----AGCGg---UUGGUCaa-CGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 33932 0.67 0.596459
Target:  5'- uCCAUCGUCGcucACCGGccGCGCGcgaaaGGUCa -3'
miRNA:   3'- cGGUAGCGGU---UGGUCaaCGCGU-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 28589 0.68 0.528943
Target:  5'- gGCCggCGCCGAgCAGgacUGCGuCAcGCUg -3'
miRNA:   3'- -CGGuaGCGGUUgGUCa--ACGC-GUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 19389 0.74 0.262898
Target:  5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3'
miRNA:   3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 16039 0.68 0.58507
Target:  5'- aGCCGUCGUCuGCuUGGUgaccucGCGCAAGgCg -3'
miRNA:   3'- -CGGUAGCGGuUG-GUCAa-----CGCGUUCgG- -5'
30417 3' -53.8 NC_006548.1 + 2151 0.79 0.126902
Target:  5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3'
miRNA:   3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 22971 0.68 0.533368
Target:  5'- gGCCcaacUCGCCGccgcgcgacugaaucGCCAGUUcGUaGCAAGCUg -3'
miRNA:   3'- -CGGu---AGCGGU---------------UGGUCAA-CG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 35316 0.68 0.581661
Target:  5'- aCCAUCGCCGccagucgaggauucACCGGUUGgucCGgGGcGCCg -3'
miRNA:   3'- cGGUAGCGGU--------------UGGUCAAC---GCgUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 30399 0.69 0.50703
Target:  5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3'
miRNA:   3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 32229 0.69 0.496219
Target:  5'- uGCCGcauagcUGCCAGCCaaGGUcgagGCGCuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUUGG--UCAa---CGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 33025 0.71 0.404286
Target:  5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3'
miRNA:   3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16318 0.73 0.315694
Target:  5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3'
miRNA:   3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 37857 0.67 0.642241
Target:  5'- cGgCAUCGCCAGCCgcAGaUUGCagauGCCa -3'
miRNA:   3'- -CgGUAGCGGUUGG--UC-AACGcguuCGG- -5'
30417 3' -53.8 NC_006548.1 + 31706 0.67 0.630783
Target:  5'- cGCCAUCcagGCCAuCCAG--GCGCAAuaCg -3'
miRNA:   3'- -CGGUAG---CGGUuGGUCaaCGCGUUcgG- -5'
30417 3' -53.8 NC_006548.1 + 4313 0.67 0.607881
Target:  5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3'
miRNA:   3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 21014 0.67 0.604452
Target:  5'- cGCCGUCGCCGGauuucUCGGaaaaguccaccuguUUGgGCAguucGGCCa -3'
miRNA:   3'- -CGGUAGCGGUU-----GGUC--------------AACgCGU----UCGG- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.