miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 28538 0.67 0.607881
Target:  5'- uGCUcggCGCCGGCCAGgucgcgGCGCuacCCg -3'
miRNA:   3'- -CGGua-GCGGUUGGUCaa----CGCGuucGG- -5'
30417 3' -53.8 NC_006548.1 + 30306 0.67 0.607881
Target:  5'- gGCUAUaGCCGuacGCCAGgugacucUGCGCGccccuGGCCu -3'
miRNA:   3'- -CGGUAgCGGU---UGGUCa------ACGCGU-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14909 0.67 0.596459
Target:  5'- uCCAcCGCCuaugcuGCCGGUgaGCGCAcugcuGCCg -3'
miRNA:   3'- cGGUaGCGGu-----UGGUCAa-CGCGUu----CGG- -5'
30417 3' -53.8 NC_006548.1 + 7679 0.67 0.642241
Target:  5'- aCCAUgacgGCCGACCAGc-GCGCGgcagAGCUg -3'
miRNA:   3'- cGGUAg---CGGUUGGUCaaCGCGU----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14293 0.67 0.595318
Target:  5'- aGCUgAUCGCgGACCuGcagGCGCAguucccgAGCCa -3'
miRNA:   3'- -CGG-UAGCGgUUGGuCaa-CGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 18457 0.67 0.596459
Target:  5'- gGCCAcCGCCAuucaaaccgACUGGgaGCGCuGGCUc -3'
miRNA:   3'- -CGGUaGCGGU---------UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22413 0.67 0.596459
Target:  5'- cGCCGUCGCggcuuaauccuCAACUGGgcgGCcGCucuGGCCg -3'
miRNA:   3'- -CGGUAGCG-----------GUUGGUCaa-CG-CGu--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 37857 0.67 0.642241
Target:  5'- cGgCAUCGCCAGCCgcAGaUUGCagauGCCa -3'
miRNA:   3'- -CgGUAGCGGUUGG--UC-AACGcguuCGG- -5'
30417 3' -53.8 NC_006548.1 + 15578 0.67 0.630783
Target:  5'- cGUCGUCGUCGGCCGGaUUGCaCAuGUa -3'
miRNA:   3'- -CGGUAGCGGUUGGUC-AACGcGUuCGg -5'
30417 3' -53.8 NC_006548.1 + 30560 0.67 0.630783
Target:  5'- uCCAU-GCCAG-CAGUUGCacccGCGGGCUg -3'
miRNA:   3'- cGGUAgCGGUUgGUCAACG----CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 25926 0.67 0.607881
Target:  5'- gGCCcgCGCgGGCCAGcagGCGguGacauccGCCa -3'
miRNA:   3'- -CGGuaGCGgUUGGUCaa-CGCguU------CGG- -5'
30417 3' -53.8 NC_006548.1 + 1210 0.67 0.607881
Target:  5'- aGCCGgaugaUCGCCGcacaggcguuGCUGGccGCGCAgacGGCCa -3'
miRNA:   3'- -CGGU-----AGCGGU----------UGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 4313 0.67 0.607881
Target:  5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3'
miRNA:   3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 33932 0.67 0.596459
Target:  5'- uCCAUCGUCGcucACCGGccGCGCGcgaaaGGUCa -3'
miRNA:   3'- cGGUAGCGGU---UGGUCaaCGCGU-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 21014 0.67 0.604452
Target:  5'- cGCCGUCGCCGGauuucUCGGaaaaguccaccuguUUGgGCAguucGGCCa -3'
miRNA:   3'- -CGGUAGCGGUU-----GGUC--------------AACgCGU----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 29744 0.67 0.607881
Target:  5'- aGCCAgcCGCCAcuACCGGcaGCcGCAccuGCCg -3'
miRNA:   3'- -CGGUa-GCGGU--UGGUCaaCG-CGUu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 25428 0.67 0.607881
Target:  5'- uCC-UUGCCAgGCCGugcGCGCAGGCCc -3'
miRNA:   3'- cGGuAGCGGU-UGGUcaaCGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 12458 0.67 0.619326
Target:  5'- aGCCAacggUCGUagguGACCAGcgcGCGCAGuGCCc -3'
miRNA:   3'- -CGGU----AGCGg---UUGGUCaa-CGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 28842 0.68 0.551194
Target:  5'- uCCAggGUCGcCCAGgcgGCGCGAGCa -3'
miRNA:   3'- cGGUagCGGUuGGUCaa-CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 22790 0.68 0.528943
Target:  5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3'
miRNA:   3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.