miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 12803 0.74 0.269978
Target:  5'- aGCUguAUUGCUcGCCAGUgccGCGCGAGCg -3'
miRNA:   3'- -CGG--UAGCGGuUGGUCAa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 13020 0.66 0.681055
Target:  5'- aGCCGUggaucaccacggcugCGCCGcacagcACCGcgcucaGCGCGAGCCa -3'
miRNA:   3'- -CGGUA---------------GCGGU------UGGUcaa---CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 13116 0.65 0.705887
Target:  5'- cGCgCG-CGCCAACCAGgccgaggagcaacUGCuGCAGGUa -3'
miRNA:   3'- -CG-GUaGCGGUUGGUCa------------ACG-CGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 13308 0.69 0.496219
Target:  5'- cGCCGguUUGCCcGCCgcAGgaGCGCGcGCCg -3'
miRNA:   3'- -CGGU--AGCGGuUGG--UCaaCGCGUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 14293 0.67 0.595318
Target:  5'- aGCUgAUCGCgGACCuGcagGCGCAguucccgAGCCa -3'
miRNA:   3'- -CGG-UAGCGgUUGGuCaa-CGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14323 0.66 0.699147
Target:  5'- gGUCAUCcgGCCAucgGCCAGgcGCcccucgauGUAGGCCc -3'
miRNA:   3'- -CGGUAG--CGGU---UGGUCaaCG--------CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 14347 0.65 0.709248
Target:  5'- uGCCca-GCCGugCAGccGUGCAucgcuacGGCCa -3'
miRNA:   3'- -CGGuagCGGUugGUCaaCGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14909 0.67 0.596459
Target:  5'- uCCAcCGCCuaugcuGCCGGUgaGCGCAcugcuGCCg -3'
miRNA:   3'- cGGUaGCGGu-----UGGUCAa-CGCGUu----CGG- -5'
30417 3' -53.8 NC_006548.1 + 15121 0.67 0.619326
Target:  5'- cGCCGUauccacaguaUGuCCAGcaacCCGGacGCGCAGGCCg -3'
miRNA:   3'- -CGGUA----------GC-GGUU----GGUCaaCGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 15159 0.69 0.50703
Target:  5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3'
miRNA:   3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 15578 0.67 0.630783
Target:  5'- cGUCGUCGUCGGCCGGaUUGCaCAuGUa -3'
miRNA:   3'- -CGGUAGCGGUUGGUC-AACGcGUuCGg -5'
30417 3' -53.8 NC_006548.1 + 16039 0.68 0.58507
Target:  5'- aGCCGUCGUCuGCuUGGUgaccucGCGCAAGgCg -3'
miRNA:   3'- -CGGUAGCGGuUG-GUCAa-----CGCGUUCgG- -5'
30417 3' -53.8 NC_006548.1 + 16041 0.68 0.54003
Target:  5'- gGCCAU-GCCGACgAGUUcuggGCGCuGGGUCu -3'
miRNA:   3'- -CGGUAgCGGUUGgUCAA----CGCG-UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16250 0.72 0.340656
Target:  5'- gGCCGggagaUCGCC-ACCAGUgGCGacGGCCg -3'
miRNA:   3'- -CGGU-----AGCGGuUGGUCAaCGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16318 0.73 0.315694
Target:  5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3'
miRNA:   3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 16423 0.68 0.58507
Target:  5'- gGCCGUaGUCAGCCgcgAGUggaagGUGgAAGCCg -3'
miRNA:   3'- -CGGUAgCGGUUGG---UCAa----CGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16866 0.66 0.663975
Target:  5'- uGCCGUUGCgcuugaagaacacCGGCCAGUacagccaaUGgGCcAGGCCc -3'
miRNA:   3'- -CGGUAGCG-------------GUUGGUCA--------ACgCG-UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 17056 0.71 0.41397
Target:  5'- aCCAUCGCCAaggucgggcucgGCCAGgUG-GCGAGUa -3'
miRNA:   3'- cGGUAGCGGU------------UGGUCaACgCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 17525 0.66 0.676509
Target:  5'- -gCAUCGCUucGGCCAGcUGCGgc-GCCa -3'
miRNA:   3'- cgGUAGCGG--UUGGUCaACGCguuCGG- -5'
30417 3' -53.8 NC_006548.1 + 17822 0.71 0.376109
Target:  5'- cGCCGgggcaaaucgCGCCGACCuGGUgGCggaucuGCAAGCCa -3'
miRNA:   3'- -CGGUa---------GCGGUUGG-UCAaCG------CGUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.