miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 246 0.69 0.485514
Target:  5'- aGCCAUCGUaccgcugcaguaUAugCAGUUccagGCGCuugcGAGCCa -3'
miRNA:   3'- -CGGUAGCG------------GUugGUCAA----CGCG----UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 802 0.66 0.687857
Target:  5'- uGCCGacaagaUCGCCAAgCAGaUGUucgGCGuGGCCa -3'
miRNA:   3'- -CGGU------AGCGGUUgGUCaACG---CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 870 0.7 0.443857
Target:  5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 1210 0.67 0.607881
Target:  5'- aGCCGgaugaUCGCCGcacaggcguuGCUGGccGCGCAgacGGCCa -3'
miRNA:   3'- -CGGU-----AGCGGU----------UGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 2151 0.79 0.126902
Target:  5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3'
miRNA:   3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 2394 0.66 0.658263
Target:  5'- aGCCGgcuggaacccuggcuUCGCCAGCCA--UGCu--GGCCa -3'
miRNA:   3'- -CGGU---------------AGCGGUUGGUcaACGcguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 3523 0.75 0.223555
Target:  5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3'
miRNA:   3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5'
30417 3' -53.8 NC_006548.1 + 3628 0.73 0.284597
Target:  5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3'
miRNA:   3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 4313 0.67 0.607881
Target:  5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3'
miRNA:   3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 5575 0.68 0.583933
Target:  5'- gGCCAg-GCCgGGCCGGcUUGCGCAacugguuGGCg -3'
miRNA:   3'- -CGGUagCGG-UUGGUC-AACGCGU-------UCGg -5'
30417 3' -53.8 NC_006548.1 + 5652 1.15 0.000293
Target:  5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 5890 0.69 0.47492
Target:  5'- cGCUuucgaCGCCAuagGCCAGUUGgucaacagcuuUGCGGGCCu -3'
miRNA:   3'- -CGGua---GCGGU---UGGUCAAC-----------GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 6524 0.69 0.47492
Target:  5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3'
miRNA:   3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 6945 0.71 0.367016
Target:  5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3'
miRNA:   3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 7679 0.67 0.642241
Target:  5'- aCCAUgacgGCCGACCAGc-GCGCGgcagAGCUg -3'
miRNA:   3'- cGGUAg---CGGUUGGUCaaCGCGU----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 11672 0.68 0.562428
Target:  5'- uGUCAUCGCCGcaACCccg-GCGCc-GCCg -3'
miRNA:   3'- -CGGUAGCGGU--UGGucaaCGCGuuCGG- -5'
30417 3' -53.8 NC_006548.1 + 11766 0.66 0.699147
Target:  5'- aCCAgCGuCCAGCUGGUcaUGCGCGGcgcgcggcggcGCCg -3'
miRNA:   3'- cGGUaGC-GGUUGGUCA--ACGCGUU-----------CGG- -5'
30417 3' -53.8 NC_006548.1 + 12127 0.71 0.404286
Target:  5'- gGCCAagGCCGAUgAGauccCGCGGGCCg -3'
miRNA:   3'- -CGGUagCGGUUGgUCaac-GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 12458 0.67 0.619326
Target:  5'- aGCCAacggUCGUagguGACCAGcgcGCGCAGuGCCc -3'
miRNA:   3'- -CGGU----AGCGg---UUGGUCaa-CGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 12591 0.68 0.562428
Target:  5'- aCCAg-GCCAGCUGGUcgGCGCcggaugccgAGGCCa -3'
miRNA:   3'- cGGUagCGGUUGGUCAa-CGCG---------UUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.