miRNA display CGI


Results 1 - 20 of 94 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 5652 1.15 0.000293
Target:  5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 2151 0.79 0.126902
Target:  5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3'
miRNA:   3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 19247 0.78 0.150915
Target:  5'- aGCCcuuGUCGCCGGCCuaccuGcgGCGCAAGCg -3'
miRNA:   3'- -CGG---UAGCGGUUGGu----CaaCGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 3523 0.75 0.223555
Target:  5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3'
miRNA:   3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5'
30417 3' -53.8 NC_006548.1 + 21129 0.74 0.249193
Target:  5'- aUCAUCGCCAaacguGCCAGcgGCGCcaucGCCg -3'
miRNA:   3'- cGGUAGCGGU-----UGGUCaaCGCGuu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 19389 0.74 0.262898
Target:  5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3'
miRNA:   3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 12803 0.74 0.269978
Target:  5'- aGCUguAUUGCUcGCCAGUgccGCGCGAGCg -3'
miRNA:   3'- -CGG--UAGCGGuUGGUCAa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 37343 0.73 0.277211
Target:  5'- cGCCAcgcUGCCGACUAGcgGC-CAGGCCg -3'
miRNA:   3'- -CGGUa--GCGGUUGGUCaaCGcGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 20671 0.73 0.277211
Target:  5'- cGCCAaCGCCAGCUcGacgaGCGCGAGCa -3'
miRNA:   3'- -CGGUaGCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 3628 0.73 0.284597
Target:  5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3'
miRNA:   3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16318 0.73 0.315694
Target:  5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3'
miRNA:   3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 16250 0.72 0.340656
Target:  5'- gGCCGggagaUCGCC-ACCAGUgGCGacGGCCg -3'
miRNA:   3'- -CGGU-----AGCGGuUGGUCAaCGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 25862 0.72 0.349289
Target:  5'- uGUCAcCGCCuGCUGGcccGCGCGGGCCg -3'
miRNA:   3'- -CGGUaGCGGuUGGUCaa-CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 6945 0.71 0.367016
Target:  5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3'
miRNA:   3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 32415 0.71 0.373365
Target:  5'- aGCCGUCGCCGccguuGCCguucgcggcgcugcAGgaGCGCAucuggacuguGGCCg -3'
miRNA:   3'- -CGGUAGCGGU-----UGG--------------UCaaCGCGU----------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 17822 0.71 0.376109
Target:  5'- cGCCGgggcaaaucgCGCCGACCuGGUgGCggaucuGCAAGCCa -3'
miRNA:   3'- -CGGUa---------GCGGUUGG-UCAaCG------CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 29957 0.71 0.394746
Target:  5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3'
miRNA:   3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 23399 0.71 0.394746
Target:  5'- gGCCAUCGCUcgcuACCuGUUGCacCAGGaCCg -3'
miRNA:   3'- -CGGUAGCGGu---UGGuCAACGc-GUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 33025 0.71 0.404286
Target:  5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3'
miRNA:   3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 12127 0.71 0.404286
Target:  5'- gGCCAagGCCGAUgAGauccCGCGGGCCg -3'
miRNA:   3'- -CGGUagCGGUUGgUCaac-GCGUUCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.