Results 1 - 20 of 94 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 5652 | 1.15 | 0.000293 |
Target: 5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3' miRNA: 3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 2151 | 0.79 | 0.126902 |
Target: 5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3' miRNA: 3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 19247 | 0.78 | 0.150915 |
Target: 5'- aGCCcuuGUCGCCGGCCuaccuGcgGCGCAAGCg -3' miRNA: 3'- -CGG---UAGCGGUUGGu----CaaCGCGUUCGg -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 3523 | 0.75 | 0.223555 |
Target: 5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3' miRNA: 3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 21129 | 0.74 | 0.249193 |
Target: 5'- aUCAUCGCCAaacguGCCAGcgGCGCcaucGCCg -3' miRNA: 3'- cGGUAGCGGU-----UGGUCaaCGCGuu--CGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 19389 | 0.74 | 0.262898 |
Target: 5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3' miRNA: 3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 12803 | 0.74 | 0.269978 |
Target: 5'- aGCUguAUUGCUcGCCAGUgccGCGCGAGCg -3' miRNA: 3'- -CGG--UAGCGGuUGGUCAa--CGCGUUCGg -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 37343 | 0.73 | 0.277211 |
Target: 5'- cGCCAcgcUGCCGACUAGcgGC-CAGGCCg -3' miRNA: 3'- -CGGUa--GCGGUUGGUCaaCGcGUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 20671 | 0.73 | 0.277211 |
Target: 5'- cGCCAaCGCCAGCUcGacgaGCGCGAGCa -3' miRNA: 3'- -CGGUaGCGGUUGGuCaa--CGCGUUCGg -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 3628 | 0.73 | 0.284597 |
Target: 5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3' miRNA: 3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 16318 | 0.73 | 0.315694 |
Target: 5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3' miRNA: 3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 16250 | 0.72 | 0.340656 |
Target: 5'- gGCCGggagaUCGCC-ACCAGUgGCGacGGCCg -3' miRNA: 3'- -CGGU-----AGCGGuUGGUCAaCGCguUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 25862 | 0.72 | 0.349289 |
Target: 5'- uGUCAcCGCCuGCUGGcccGCGCGGGCCg -3' miRNA: 3'- -CGGUaGCGGuUGGUCaa-CGCGUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 6945 | 0.71 | 0.367016 |
Target: 5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3' miRNA: 3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 32415 | 0.71 | 0.373365 |
Target: 5'- aGCCGUCGCCGccguuGCCguucgcggcgcugcAGgaGCGCAucuggacuguGGCCg -3' miRNA: 3'- -CGGUAGCGGU-----UGG--------------UCaaCGCGU----------UCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 17822 | 0.71 | 0.376109 |
Target: 5'- cGCCGgggcaaaucgCGCCGACCuGGUgGCggaucuGCAAGCCa -3' miRNA: 3'- -CGGUa---------GCGGUUGG-UCAaCG------CGUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 23399 | 0.71 | 0.394746 |
Target: 5'- gGCCAUCGCUcgcuACCuGUUGCacCAGGaCCg -3' miRNA: 3'- -CGGUAGCGGu---UGGuCAACGc-GUUC-GG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 29957 | 0.71 | 0.394746 |
Target: 5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3' miRNA: 3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 12127 | 0.71 | 0.404286 |
Target: 5'- gGCCAagGCCGAUgAGauccCGCGGGCCg -3' miRNA: 3'- -CGGUagCGGUUGgUCaac-GCGUUCGG- -5' |
|||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 33025 | 0.71 | 0.404286 |
Target: 5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3' miRNA: 3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home