miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 13308 0.69 0.496219
Target:  5'- cGCCGguUUGCCcGCCgcAGgaGCGCGcGCCg -3'
miRNA:   3'- -CGGU--AGCGGuUGG--UCaaCGCGUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 17056 0.71 0.41397
Target:  5'- aCCAUCGCCAaggucgggcucgGCCAGgUG-GCGAGUa -3'
miRNA:   3'- cGGUAGCGGU------------UGGUCaACgCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 29418 0.7 0.423795
Target:  5'- aGCCgAUCGCUGGCCGacGUUGCcGCGcagcagcuGGCCc -3'
miRNA:   3'- -CGG-UAGCGGUUGGU--CAACG-CGU--------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 17950 0.7 0.433758
Target:  5'- aGCCggaggGUgGCCAGCCuGgcggGCGCGAGUg -3'
miRNA:   3'- -CGG-----UAgCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 5890 0.69 0.47492
Target:  5'- cGCUuucgaCGCCAuagGCCAGUUGgucaacagcuuUGCGGGCCu -3'
miRNA:   3'- -CGGua---GCGGU---UGGUCAAC-----------GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 246 0.69 0.485514
Target:  5'- aGCCAUCGUaccgcugcaguaUAugCAGUUccagGCGCuugcGAGCCa -3'
miRNA:   3'- -CGGUAGCG------------GUugGUCAA----CGCG----UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 36898 0.69 0.485514
Target:  5'- gGCgCAcCG-CAACCGGcUGCuGCAGGCCg -3'
miRNA:   3'- -CG-GUaGCgGUUGGUCaACG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 24993 0.69 0.48658
Target:  5'- cGCCGaCGCCAACCuaGGUggcuucggucgcaucGUGCAaaaGGCCg -3'
miRNA:   3'- -CGGUaGCGGUUGG--UCAa--------------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 23801 0.69 0.496219
Target:  5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3'
miRNA:   3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 12127 0.71 0.404286
Target:  5'- gGCCAagGCCGAUgAGauccCGCGGGCCg -3'
miRNA:   3'- -CGGUagCGGUUGgUCaac-GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 23399 0.71 0.394746
Target:  5'- gGCCAUCGCUcgcuACCuGUUGCacCAGGaCCg -3'
miRNA:   3'- -CGGUAGCGGu---UGGuCAACGc-GUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 17822 0.71 0.376109
Target:  5'- cGCCGgggcaaaucgCGCCGACCuGGUgGCggaucuGCAAGCCa -3'
miRNA:   3'- -CGGUa---------GCGGUUGG-UCAaCG------CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 3523 0.75 0.223555
Target:  5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3'
miRNA:   3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5'
30417 3' -53.8 NC_006548.1 + 21129 0.74 0.249193
Target:  5'- aUCAUCGCCAaacguGCCAGcgGCGCcaucGCCg -3'
miRNA:   3'- cGGUAGCGGU-----UGGUCaaCGCGuu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 12803 0.74 0.269978
Target:  5'- aGCUguAUUGCUcGCCAGUgccGCGCGAGCg -3'
miRNA:   3'- -CGG--UAGCGGuUGGUCAa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 20671 0.73 0.277211
Target:  5'- cGCCAaCGCCAGCUcGacgaGCGCGAGCa -3'
miRNA:   3'- -CGGUaGCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 37343 0.73 0.277211
Target:  5'- cGCCAcgcUGCCGACUAGcgGC-CAGGCCg -3'
miRNA:   3'- -CGGUa--GCGGUUGGUCaaCGcGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16250 0.72 0.340656
Target:  5'- gGCCGggagaUCGCC-ACCAGUgGCGacGGCCg -3'
miRNA:   3'- -CGGU-----AGCGGuUGGUCAaCGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 25862 0.72 0.349289
Target:  5'- uGUCAcCGCCuGCUGGcccGCGCGGGCCg -3'
miRNA:   3'- -CGGUaGCGGuUGGUCaa-CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 32415 0.71 0.373365
Target:  5'- aGCCGUCGCCGccguuGCCguucgcggcgcugcAGgaGCGCAucuggacuguGGCCg -3'
miRNA:   3'- -CGGUAGCGGU-----UGG--------------UCaaCGCGU----------UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.