miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 14347 0.65 0.709248
Target:  5'- uGCCca-GCCGugCAGccGUGCAucgcuacGGCCa -3'
miRNA:   3'- -CGGuagCGGUugGUCaaCGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 13116 0.65 0.705887
Target:  5'- cGCgCG-CGCCAACCAGgccgaggagcaacUGCuGCAGGUa -3'
miRNA:   3'- -CG-GUaGCGGUUGGUCa------------ACG-CGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 802 0.66 0.687857
Target:  5'- uGCCGacaagaUCGCCAAgCAGaUGUucgGCGuGGCCa -3'
miRNA:   3'- -CGGU------AGCGGUUgGUCaACG---CGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 27394 0.66 0.699147
Target:  5'- gGCCAaUGCCuauGCCAGc-GCGCugaacaggaucaAGGCCc -3'
miRNA:   3'- -CGGUaGCGGu--UGGUCaaCGCG------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 37966 0.66 0.687857
Target:  5'- aGCCuuuccgcaUGCCAACCgcuucgGGaUUGCGCGccuGGCCu -3'
miRNA:   3'- -CGGua------GCGGUUGG------UC-AACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 2394 0.66 0.658263
Target:  5'- aGCCGgcuggaacccuggcuUCGCCAGCCA--UGCu--GGCCa -3'
miRNA:   3'- -CGGU---------------AGCGGUUGGUcaACGcguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30115 0.66 0.676509
Target:  5'- cGCCAUCGaCGAUCcGUUGCGgAucGUCa -3'
miRNA:   3'- -CGGUAGCgGUUGGuCAACGCgUu-CGG- -5'
30417 3' -53.8 NC_006548.1 + 13020 0.66 0.681055
Target:  5'- aGCCGUggaucaccacggcugCGCCGcacagcACCGcgcucaGCGCGAGCCa -3'
miRNA:   3'- -CGGUA---------------GCGGU------UGGUcaa---CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 18537 0.66 0.687857
Target:  5'- cGCUAUCgaGCCAGcgcucCCAGUcgguuugaaugGCGguGGCCa -3'
miRNA:   3'- -CGGUAG--CGGUU-----GGUCAa----------CGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 11766 0.66 0.699147
Target:  5'- aCCAgCGuCCAGCUGGUcaUGCGCGGcgcgcggcggcGCCg -3'
miRNA:   3'- cGGUaGC-GGUUGGUCA--ACGCGUU-----------CGG- -5'
30417 3' -53.8 NC_006548.1 + 17525 0.66 0.676509
Target:  5'- -gCAUCGCUucGGCCAGcUGCGgc-GCCa -3'
miRNA:   3'- cgGUAGCGG--UUGGUCaACGCguuCGG- -5'
30417 3' -53.8 NC_006548.1 + 29289 0.66 0.675372
Target:  5'- cGCUcgAUCGCgGccggaucGCCAGUUGCcuuGGCCa -3'
miRNA:   3'- -CGG--UAGCGgU-------UGGUCAACGcguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16866 0.66 0.663975
Target:  5'- uGCCGUUGCgcuugaagaacacCGGCCAGUacagccaaUGgGCcAGGCCc -3'
miRNA:   3'- -CGGUAGCG-------------GUUGGUCA--------ACgCG-UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 14323 0.66 0.699147
Target:  5'- gGUCAUCcgGCCAucgGCCAGgcGCcccucgauGUAGGCCc -3'
miRNA:   3'- -CGGUAG--CGGU---UGGUCaaCG--------CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30596 0.66 0.699147
Target:  5'- gGCCGUUGgCGaagaACCAGUaGgGCAucGGCUg -3'
miRNA:   3'- -CGGUAGCgGU----UGGUCAaCgCGU--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 25325 0.66 0.687857
Target:  5'- cGCCGaUGauCCGAuCCAGcgGCGgCAAGCCu -3'
miRNA:   3'- -CGGUaGC--GGUU-GGUCaaCGC-GUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 1210 0.67 0.607881
Target:  5'- aGCCGgaugaUCGCCGcacaggcguuGCUGGccGCGCAgacGGCCa -3'
miRNA:   3'- -CGGU-----AGCGGU----------UGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 28538 0.67 0.607881
Target:  5'- uGCUcggCGCCGGCCAGgucgcgGCGCuacCCg -3'
miRNA:   3'- -CGGua-GCGGUUGGUCaa----CGCGuucGG- -5'
30417 3' -53.8 NC_006548.1 + 30306 0.67 0.607881
Target:  5'- gGCUAUaGCCGuacGCCAGgugacucUGCGCGccccuGGCCu -3'
miRNA:   3'- -CGGUAgCGGU---UGGUCa------ACGCGU-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 4313 0.67 0.607881
Target:  5'- uGCCGUcaacaaCGCCAcCCGcgcccUGCGCAAGgCCg -3'
miRNA:   3'- -CGGUA------GCGGUuGGUca---ACGCGUUC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.