Results 1 - 20 of 94 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30417 | 3' | -53.8 | NC_006548.1 | + | 5652 | 1.15 | 0.000293 |
Target: 5'- cGCCAUCGCCAACCAGUUGCGCAAGCCg -3' miRNA: 3'- -CGGUAGCGGUUGGUCAACGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 28589 | 0.68 | 0.528943 |
Target: 5'- gGCCggCGCCGAgCAGgacUGCGuCAcGCUg -3' miRNA: 3'- -CGGuaGCGGUUgGUCa--ACGC-GUuCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32899 | 0.68 | 0.550074 |
Target: 5'- cGCCAgcggguaUCGCacuCGACCGuuugUGCGCcGGCCg -3' miRNA: 3'- -CGGU-------AGCG---GUUGGUca--ACGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 30596 | 0.66 | 0.699147 |
Target: 5'- gGCCGUUGgCGaagaACCAGUaGgGCAucGGCUg -3' miRNA: 3'- -CGGUAGCgGU----UGGUCAaCgCGU--UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 16318 | 0.73 | 0.315694 |
Target: 5'- gGCCGUCGCC-ACUGGUgGCGaucucccGGCCa -3' miRNA: 3'- -CGGUAGCGGuUGGUCAaCGCgu-----UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 6945 | 0.71 | 0.367016 |
Target: 5'- aGCUAUuggCGCCGgaGCCGGUcaccgaacUGCGC-AGCCu -3' miRNA: 3'- -CGGUA---GCGGU--UGGUCA--------ACGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 33025 | 0.71 | 0.404286 |
Target: 5'- gGCCAgCGCCGcugcACCGGgcGCGCcAGUUg -3' miRNA: 3'- -CGGUaGCGGU----UGGUCaaCGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 870 | 0.7 | 0.443857 |
Target: 5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3' miRNA: 3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32229 | 0.69 | 0.496219 |
Target: 5'- uGCCGcauagcUGCCAGCCaaGGUcgagGCGCuGGCCg -3' miRNA: 3'- -CGGUa-----GCGGUUGG--UCAa---CGCGuUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 22790 | 0.68 | 0.528943 |
Target: 5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3' miRNA: 3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 35027 | 0.69 | 0.50703 |
Target: 5'- -gCGUgGCUGACCAG--GCGCAGGgCCa -3' miRNA: 3'- cgGUAgCGGUUGGUCaaCGCGUUC-GG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 6524 | 0.69 | 0.47492 |
Target: 5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3' miRNA: 3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 2151 | 0.79 | 0.126902 |
Target: 5'- cGCCAagGUCGACCAGUU-CGCGGGCg -3' miRNA: 3'- -CGGUagCGGUUGGUCAAcGCGUUCGg -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 30399 | 0.69 | 0.50703 |
Target: 5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3' miRNA: 3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 19389 | 0.74 | 0.262898 |
Target: 5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3' miRNA: 3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 32640 | 0.7 | 0.454086 |
Target: 5'- cGCCAUCaGC---CCAGUccgGCGCAaacGGCCa -3' miRNA: 3'- -CGGUAG-CGguuGGUCAa--CGCGU---UCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 15159 | 0.69 | 0.50703 |
Target: 5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3' miRNA: 3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 22971 | 0.68 | 0.533368 |
Target: 5'- gGCCcaacUCGCCGccgcgcgacugaaucGCCAGUUcGUaGCAAGCUg -3' miRNA: 3'- -CGGu---AGCGGU---------------UGGUCAA-CG-CGUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 3628 | 0.73 | 0.284597 |
Target: 5'- aGCCGUuacgcagaucUGCCAGCCAGa-GCGaGAGCCg -3' miRNA: 3'- -CGGUA----------GCGGUUGGUCaaCGCgUUCGG- -5' |
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30417 | 3' | -53.8 | NC_006548.1 | + | 29957 | 0.71 | 0.394746 |
Target: 5'- uGCCGcacagCGCCgGACCAGUcaUGCaGCGcAGCCc -3' miRNA: 3'- -CGGUa----GCGG-UUGGUCA--ACG-CGU-UCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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