miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 28538 0.67 0.607881
Target:  5'- uGCUcggCGCCGGCCAGgucgcgGCGCuacCCg -3'
miRNA:   3'- -CGGua-GCGGUUGGUCaa----CGCGuucGG- -5'
30417 3' -53.8 NC_006548.1 + 19247 0.78 0.150915
Target:  5'- aGCCcuuGUCGCCGGCCuaccuGcgGCGCAAGCg -3'
miRNA:   3'- -CGG---UAGCGGUUGGu----CaaCGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 14347 0.65 0.709248
Target:  5'- uGCCca-GCCGugCAGccGUGCAucgcuacGGCCa -3'
miRNA:   3'- -CGGuagCGGUugGUCaaCGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 13116 0.65 0.705887
Target:  5'- cGCgCG-CGCCAACCAGgccgaggagcaacUGCuGCAGGUa -3'
miRNA:   3'- -CG-GUaGCGGUUGGUCa------------ACG-CGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 27394 0.66 0.699147
Target:  5'- gGCCAaUGCCuauGCCAGc-GCGCugaacaggaucaAGGCCc -3'
miRNA:   3'- -CGGUaGCGGu--UGGUCaaCGCG------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 37966 0.66 0.687857
Target:  5'- aGCCuuuccgcaUGCCAACCgcuucgGGaUUGCGCGccuGGCCu -3'
miRNA:   3'- -CGGua------GCGGUUGG------UC-AACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 2394 0.66 0.658263
Target:  5'- aGCCGgcuggaacccuggcuUCGCCAGCCA--UGCu--GGCCa -3'
miRNA:   3'- -CGGU---------------AGCGGUUGGUcaACGcguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 15121 0.67 0.619326
Target:  5'- cGCCGUauccacaguaUGuCCAGcaacCCGGacGCGCAGGCCg -3'
miRNA:   3'- -CGGUA----------GC-GGUU----GGUCaaCGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 29651 0.67 0.619326
Target:  5'- uGCCGcUGCCAgcgguGCCGGUgcggcagGUGCGgcuGCCg -3'
miRNA:   3'- -CGGUaGCGGU-----UGGUCAa------CGCGUu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 22519 0.67 0.619326
Target:  5'- uGCCG-CaCCAACCAcuaccgGCGCAcAGCCg -3'
miRNA:   3'- -CGGUaGcGGUUGGUcaa---CGCGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 3523 0.75 0.223555
Target:  5'- gGCCAccaGCCcggcACCAGUUGCGuCAGGCa -3'
miRNA:   3'- -CGGUag-CGGu---UGGUCAACGC-GUUCGg -5'
30417 3' -53.8 NC_006548.1 + 30306 0.67 0.607881
Target:  5'- gGCUAUaGCCGuacGCCAGgugacucUGCGCGccccuGGCCu -3'
miRNA:   3'- -CGGUAgCGGU---UGGUCa------ACGCGU-----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22413 0.67 0.596459
Target:  5'- cGCCGUCGCggcuuaauccuCAACUGGgcgGCcGCucuGGCCg -3'
miRNA:   3'- -CGGUAGCG-----------GUUGGUCaa-CG-CGu--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 14909 0.67 0.596459
Target:  5'- uCCAcCGCCuaugcuGCCGGUgaGCGCAcugcuGCCg -3'
miRNA:   3'- cGGUaGCGGu-----UGGUCAa-CGCGUu----CGG- -5'
30417 3' -53.8 NC_006548.1 + 18457 0.67 0.596459
Target:  5'- gGCCAcCGCCAuucaaaccgACUGGgaGCGCuGGCUc -3'
miRNA:   3'- -CGGUaGCGGU---------UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 14293 0.67 0.595318
Target:  5'- aGCUgAUCGCgGACCuGcagGCGCAguucccgAGCCa -3'
miRNA:   3'- -CGG-UAGCGgUUGGuCaa-CGCGU-------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 33236 0.68 0.58507
Target:  5'- uGCCGcaauUUGCCGACCAG--GCGgGGGUUg -3'
miRNA:   3'- -CGGU----AGCGGUUGGUCaaCGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 16423 0.68 0.58507
Target:  5'- gGCCGUaGUCAGCCgcgAGUggaagGUGgAAGCCg -3'
miRNA:   3'- -CGGUAgCGGUUGG---UCAa----CGCgUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 5575 0.68 0.583933
Target:  5'- gGCCAg-GCCgGGCCGGcUUGCGCAacugguuGGCg -3'
miRNA:   3'- -CGGUagCGG-UUGGUC-AACGCGU-------UCGg -5'
30417 3' -53.8 NC_006548.1 + 31266 0.68 0.562428
Target:  5'- uGCCGggGCCAAUCAGUuccagaUG-GCGGGCa -3'
miRNA:   3'- -CGGUagCGGUUGGUCA------ACgCGUUCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.