miRNA display CGI


Results 21 - 40 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 17056 0.71 0.41397
Target:  5'- aCCAUCGCCAaggucgggcucgGCCAGgUG-GCGAGUa -3'
miRNA:   3'- cGGUAGCGGU------------UGGUCaACgCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 29418 0.7 0.423795
Target:  5'- aGCCgAUCGCUGGCCGacGUUGCcGCGcagcagcuGGCCc -3'
miRNA:   3'- -CGG-UAGCGGUUGGU--CAACG-CGU--------UCGG- -5'
30417 3' -53.8 NC_006548.1 + 17950 0.7 0.433758
Target:  5'- aGCCggaggGUgGCCAGCCuGgcggGCGCGAGUg -3'
miRNA:   3'- -CGG-----UAgCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 870 0.7 0.443857
Target:  5'- aGCCAguugccCGCCGAgguCCAGgucaucgagGCGCAgcuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUU---GGUCaa-------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 32640 0.7 0.454086
Target:  5'- cGCCAUCaGC---CCAGUccgGCGCAaacGGCCa -3'
miRNA:   3'- -CGGUAG-CGguuGGUCAa--CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 6524 0.69 0.47492
Target:  5'- gGUCAUCGUgCAcgcGCCAGggcgGCGCGGGUUa -3'
miRNA:   3'- -CGGUAGCG-GU---UGGUCaa--CGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 5890 0.69 0.47492
Target:  5'- cGCUuucgaCGCCAuagGCCAGUUGgucaacagcuuUGCGGGCCu -3'
miRNA:   3'- -CGGua---GCGGU---UGGUCAAC-----------GCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 246 0.69 0.485514
Target:  5'- aGCCAUCGUaccgcugcaguaUAugCAGUUccagGCGCuugcGAGCCa -3'
miRNA:   3'- -CGGUAGCG------------GUugGUCAA----CGCG----UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 36898 0.69 0.485514
Target:  5'- gGCgCAcCG-CAACCGGcUGCuGCAGGCCg -3'
miRNA:   3'- -CG-GUaGCgGUUGGUCaACG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 24993 0.69 0.48658
Target:  5'- cGCCGaCGCCAACCuaGGUggcuucggucgcaucGUGCAaaaGGCCg -3'
miRNA:   3'- -CGGUaGCGGUUGG--UCAa--------------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22644 0.69 0.496219
Target:  5'- cGCCGUccuggaguugaaCGCCGGCCAGUUG-GCcgucgaucAGGCUc -3'
miRNA:   3'- -CGGUA------------GCGGUUGGUCAACgCG--------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 32229 0.69 0.496219
Target:  5'- uGCCGcauagcUGCCAGCCaaGGUcgagGCGCuGGCCg -3'
miRNA:   3'- -CGGUa-----GCGGUUGG--UCAa---CGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 13308 0.69 0.496219
Target:  5'- cGCCGguUUGCCcGCCgcAGgaGCGCGcGCCg -3'
miRNA:   3'- -CGGU--AGCGGuUGG--UCaaCGCGUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 23801 0.69 0.496219
Target:  5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3'
miRNA:   3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 30399 0.69 0.50703
Target:  5'- cGUCGgugcCGCCcaGGCCAGggGCGCGcagAGUCa -3'
miRNA:   3'- -CGGUa---GCGG--UUGGUCaaCGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 35027 0.69 0.50703
Target:  5'- -gCGUgGCUGACCAG--GCGCAGGgCCa -3'
miRNA:   3'- cgGUAgCGGUUGGUCaaCGCGUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 15159 0.69 0.50703
Target:  5'- gGCCAUUGgCGAacuCCAGga-CGUAGGCCg -3'
miRNA:   3'- -CGGUAGCgGUU---GGUCaacGCGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 28589 0.68 0.528943
Target:  5'- gGCCggCGCCGAgCAGgacUGCGuCAcGCUg -3'
miRNA:   3'- -CGGuaGCGGUUgGUCa--ACGC-GUuCGG- -5'
30417 3' -53.8 NC_006548.1 + 22790 0.68 0.528943
Target:  5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3'
miRNA:   3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 30882 0.68 0.528943
Target:  5'- aGCCGUUGUCAAUCAGcUGCGgGAuUCg -3'
miRNA:   3'- -CGGUAGCGGUUGGUCaACGCgUUcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.