miRNA display CGI


Results 41 - 60 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30417 3' -53.8 NC_006548.1 + 17950 0.7 0.433758
Target:  5'- aGCCggaggGUgGCCAGCCuGgcggGCGCGAGUg -3'
miRNA:   3'- -CGG-----UAgCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 18457 0.67 0.596459
Target:  5'- gGCCAcCGCCAuucaaaccgACUGGgaGCGCuGGCUc -3'
miRNA:   3'- -CGGUaGCGGU---------UGGUCaaCGCGuUCGG- -5'
30417 3' -53.8 NC_006548.1 + 18537 0.66 0.687857
Target:  5'- cGCUAUCgaGCCAGcgcucCCAGUcgguuugaaugGCGguGGCCa -3'
miRNA:   3'- -CGGUAG--CGGUU-----GGUCAa----------CGCguUCGG- -5'
30417 3' -53.8 NC_006548.1 + 19247 0.78 0.150915
Target:  5'- aGCCcuuGUCGCCGGCCuaccuGcgGCGCAAGCg -3'
miRNA:   3'- -CGG---UAGCGGUUGGu----CaaCGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 19389 0.74 0.262898
Target:  5'- uGCCGUCcagcugguaGCgCAGCaGGUUGCGCAgguGGCCg -3'
miRNA:   3'- -CGGUAG---------CG-GUUGgUCAACGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 19602 0.68 0.58507
Target:  5'- aGCCAUgGCCgAGCCGGcaucuggaUUGUGUAGGguCCg -3'
miRNA:   3'- -CGGUAgCGG-UUGGUC--------AACGCGUUC--GG- -5'
30417 3' -53.8 NC_006548.1 + 20671 0.73 0.277211
Target:  5'- cGCCAaCGCCAGCUcGacgaGCGCGAGCa -3'
miRNA:   3'- -CGGUaGCGGUUGGuCaa--CGCGUUCGg -5'
30417 3' -53.8 NC_006548.1 + 21014 0.67 0.604452
Target:  5'- cGCCGUCGCCGGauuucUCGGaaaaguccaccuguUUGgGCAguucGGCCa -3'
miRNA:   3'- -CGGUAGCGGUU-----GGUC--------------AACgCGU----UCGG- -5'
30417 3' -53.8 NC_006548.1 + 21129 0.74 0.249193
Target:  5'- aUCAUCGCCAaacguGCCAGcgGCGCcaucGCCg -3'
miRNA:   3'- cGGUAGCGGU-----UGGUCaaCGCGuu--CGG- -5'
30417 3' -53.8 NC_006548.1 + 21284 0.68 0.58507
Target:  5'- uGCUgaUGCCGAUCAGcaGCGCAGuGCUa -3'
miRNA:   3'- -CGGuaGCGGUUGGUCaaCGCGUU-CGG- -5'
30417 3' -53.8 NC_006548.1 + 22306 0.68 0.551194
Target:  5'- uCgAUCGCCGauccgaacAUCGGUcUGCGCGguGGCCa -3'
miRNA:   3'- cGgUAGCGGU--------UGGUCA-ACGCGU--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22413 0.67 0.596459
Target:  5'- cGCCGUCGCggcuuaauccuCAACUGGgcgGCcGCucuGGCCg -3'
miRNA:   3'- -CGGUAGCG-----------GUUGGUCaa-CG-CGu--UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22519 0.67 0.619326
Target:  5'- uGCCG-CaCCAACCAcuaccgGCGCAcAGCCg -3'
miRNA:   3'- -CGGUaGcGGUUGGUcaa---CGCGU-UCGG- -5'
30417 3' -53.8 NC_006548.1 + 22644 0.69 0.496219
Target:  5'- cGCCGUccuggaguugaaCGCCGGCCAGUUG-GCcgucgaucAGGCUc -3'
miRNA:   3'- -CGGUA------------GCGGUUGGUCAACgCG--------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22790 0.68 0.528943
Target:  5'- uUCAUCGCCGGCCGGcacgagcaccuucUGCGCcugaauggcagcgacGAGCUg -3'
miRNA:   3'- cGGUAGCGGUUGGUCa------------ACGCG---------------UUCGG- -5'
30417 3' -53.8 NC_006548.1 + 22971 0.68 0.533368
Target:  5'- gGCCcaacUCGCCGccgcgcgacugaaucGCCAGUUcGUaGCAAGCUg -3'
miRNA:   3'- -CGGu---AGCGGU---------------UGGUCAA-CG-CGUUCGG- -5'
30417 3' -53.8 NC_006548.1 + 23399 0.71 0.394746
Target:  5'- gGCCAUCGCUcgcuACCuGUUGCacCAGGaCCg -3'
miRNA:   3'- -CGGUAGCGGu---UGGuCAACGc-GUUC-GG- -5'
30417 3' -53.8 NC_006548.1 + 23801 0.69 0.496219
Target:  5'- aGCCcgCcgGCCAuGCCGGUgGCGCGAcCCg -3'
miRNA:   3'- -CGGuaG--CGGU-UGGUCAaCGCGUUcGG- -5'
30417 3' -53.8 NC_006548.1 + 24993 0.69 0.48658
Target:  5'- cGCCGaCGCCAACCuaGGUggcuucggucgcaucGUGCAaaaGGCCg -3'
miRNA:   3'- -CGGUaGCGGUUGG--UCAa--------------CGCGU---UCGG- -5'
30417 3' -53.8 NC_006548.1 + 25325 0.66 0.687857
Target:  5'- cGCCGaUGauCCGAuCCAGcgGCGgCAAGCCu -3'
miRNA:   3'- -CGGUaGC--GGUU-GGUCaaCGC-GUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.