miRNA display CGI


Results 1 - 20 of 27 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30418 5' -54.8 NC_006548.1 + 5817 1.14 0.000333
Target:  5'- cGGCACGGAACACAGCUUGGUAGCCCCc -3'
miRNA:   3'- -CCGUGCCUUGUGUCGAACCAUCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 14483 0.81 0.081237
Target:  5'- gGGCACGGAu--CAGCUUGGccGCCUCg -3'
miRNA:   3'- -CCGUGCCUuguGUCGAACCauCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 18568 0.75 0.197438
Target:  5'- gGGCAU-GAGCGCAGCUggcgUGGaAGCCCg -3'
miRNA:   3'- -CCGUGcCUUGUGUCGA----ACCaUCGGGg -5'
30418 5' -54.8 NC_006548.1 + 35015 0.74 0.22023
Target:  5'- aGGCGCaGGGC-CAGCUcgucaccGGUAGCCUCa -3'
miRNA:   3'- -CCGUGcCUUGuGUCGAa------CCAUCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 4677 0.74 0.245228
Target:  5'- uGCGCGGGGaa-AGCUUGGU-GCCCa -3'
miRNA:   3'- cCGUGCCUUgugUCGAACCAuCGGGg -5'
30418 5' -54.8 NC_006548.1 + 20712 0.72 0.294582
Target:  5'- uGGCGCuccuGGAGCGCAGCUucgucaggcaUGGUcguGUCCUg -3'
miRNA:   3'- -CCGUG----CCUUGUGUCGA----------ACCAu--CGGGG- -5'
30418 5' -54.8 NC_006548.1 + 12944 0.72 0.310036
Target:  5'- aGCGCGGugcugugcGGCGCAGCcgUGGUgaccacGGCUCCg -3'
miRNA:   3'- cCGUGCC--------UUGUGUCGa-ACCA------UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 14406 0.71 0.334361
Target:  5'- uGCACGGcuGCACGGCUgGGcAGCUCg -3'
miRNA:   3'- cCGUGCCu-UGUGUCGAaCCaUCGGGg -5'
30418 5' -54.8 NC_006548.1 + 18453 0.7 0.387092
Target:  5'- cGGUuCGGGugGCAGCggcgUGGUcuucugcagGGCgCCCu -3'
miRNA:   3'- -CCGuGCCUugUGUCGa---ACCA---------UCG-GGG- -5'
30418 5' -54.8 NC_006548.1 + 30718 0.7 0.42516
Target:  5'- cGGCAcCGGGGCAuCAGC-----AGCCCCu -3'
miRNA:   3'- -CCGU-GCCUUGU-GUCGaaccaUCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 34911 0.69 0.463316
Target:  5'- cGCAcCGGAuACGCAGUaacccggccggcUGGUcAGCCCCg -3'
miRNA:   3'- cCGU-GCCU-UGUGUCGa-----------ACCA-UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 30515 0.69 0.475734
Target:  5'- uGGCAUGGAAC-CAGCcgau--GCCCUa -3'
miRNA:   3'- -CCGUGCCUUGuGUCGaaccauCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 28035 0.68 0.540079
Target:  5'- cGGCGCGGcccuGCAggaGGCcuaUGGUccAGCCUCa -3'
miRNA:   3'- -CCGUGCCu---UGUg--UCGa--ACCA--UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 4303 0.67 0.551109
Target:  5'- aGCACGGuGCAgAGCggcagaugGGUAGCUa- -3'
miRNA:   3'- cCGUGCCuUGUgUCGaa------CCAUCGGgg -5'
30418 5' -54.8 NC_006548.1 + 14796 0.67 0.562206
Target:  5'- cGCuuccCGGAuCGCuuGCUUGGUcGCCUCg -3'
miRNA:   3'- cCGu---GCCUuGUGu-CGAACCAuCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 16193 0.67 0.584569
Target:  5'- cGGCGCGGuGCGCGGUaauaacgacuUUGGaGGCUa- -3'
miRNA:   3'- -CCGUGCCuUGUGUCG----------AACCaUCGGgg -5'
30418 5' -54.8 NC_006548.1 + 9662 0.67 0.584569
Target:  5'- gGGUGCGGGGCAUGGC--GGU-GUUCCu -3'
miRNA:   3'- -CCGUGCCUUGUGUCGaaCCAuCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 21852 0.67 0.584569
Target:  5'- aGGCcCGGAcCuccaAGC-UGGUcuucAGCCCCa -3'
miRNA:   3'- -CCGuGCCUuGug--UCGaACCA----UCGGGG- -5'
30418 5' -54.8 NC_006548.1 + 20079 0.67 0.58457
Target:  5'- aGGC-CGGcGCAUugAGCUuggGGUGGCCg- -3'
miRNA:   3'- -CCGuGCCuUGUG--UCGAa--CCAUCGGgg -5'
30418 5' -54.8 NC_006548.1 + 8215 0.67 0.594692
Target:  5'- cGGCagcucuacuGCGGAuuuCGGUUUGGUGGCaguacguCCCa -3'
miRNA:   3'- -CCG---------UGCCUuguGUCGAACCAUCG-------GGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.