miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30419 3' -57.3 NC_006548.1 + 16315 0.66 0.489802
Target:  5'- gGUGCccaacGAUUcgauCCUGCAGCgCCgUGGCg -3'
miRNA:   3'- aCACGa----CUAGu---GGGCGUUG-GGgACCG- -5'
30419 3' -57.3 NC_006548.1 + 27141 0.66 0.479386
Target:  5'- cGUaCUGG-CugCCGCAGCaUCCUGGg -3'
miRNA:   3'- aCAcGACUaGugGGCGUUG-GGGACCg -5'
30419 3' -57.3 NC_006548.1 + 27816 0.66 0.469081
Target:  5'- --cGCUGcaccUCACCCGCcaggaAACCaaUGGCa -3'
miRNA:   3'- acaCGACu---AGUGGGCG-----UUGGggACCG- -5'
30419 3' -57.3 NC_006548.1 + 14558 0.66 0.469081
Target:  5'- --gGCUGAUCGCgUCG-GACUgCUGGCg -3'
miRNA:   3'- acaCGACUAGUG-GGCgUUGGgGACCG- -5'
30419 3' -57.3 NC_006548.1 + 20871 0.66 0.45889
Target:  5'- --aGCUcGAUCACCgG-AGCCuUCUGGCg -3'
miRNA:   3'- acaCGA-CUAGUGGgCgUUGG-GGACCG- -5'
30419 3' -57.3 NC_006548.1 + 26316 0.68 0.372966
Target:  5'- --gGCcgGGUCuCCUGCAGCCacuugaagaCCUGGCg -3'
miRNA:   3'- acaCGa-CUAGuGGGCGUUGG---------GGACCG- -5'
30419 3' -57.3 NC_006548.1 + 30751 0.68 0.372966
Target:  5'- --aGCUGcuAUC-UCCGCGAUCCCgccgGGCg -3'
miRNA:   3'- acaCGAC--UAGuGGGCGUUGGGGa---CCG- -5'
30419 3' -57.3 NC_006548.1 + 27527 0.68 0.364115
Target:  5'- -cUGCUGuUCGCCgGCAucGCCgguuacggCCUGGCc -3'
miRNA:   3'- acACGACuAGUGGgCGU--UGG--------GGACCG- -5'
30419 3' -57.3 NC_006548.1 + 8876 0.7 0.283773
Target:  5'- --cGCUGAUCACaCGCua--CCUGGCg -3'
miRNA:   3'- acaCGACUAGUGgGCGuuggGGACCG- -5'
30419 3' -57.3 NC_006548.1 + 7623 0.7 0.276558
Target:  5'- --cGCUGGUCGgCCGuCAugguuuCCaCCUGGCg -3'
miRNA:   3'- acaCGACUAGUgGGC-GUu-----GG-GGACCG- -5'
30419 3' -57.3 NC_006548.1 + 23527 0.71 0.249162
Target:  5'- --gGCcgGAUgACCCGCuGACCCCgccaGGCg -3'
miRNA:   3'- acaCGa-CUAgUGGGCG-UUGGGGa---CCG- -5'
30419 3' -57.3 NC_006548.1 + 37760 0.71 0.224047
Target:  5'- --aGCUGAUCugUCGuCGGCcucaccgaaCCCUGGCa -3'
miRNA:   3'- acaCGACUAGugGGC-GUUG---------GGGACCG- -5'
30419 3' -57.3 NC_006548.1 + 35161 0.72 0.216943
Target:  5'- aGUGC-GAUCACCUGCcuugaucucgaccAGcucauccaacggcCCCCUGGCa -3'
miRNA:   3'- aCACGaCUAGUGGGCG-------------UU-------------GGGGACCG- -5'
30419 3' -57.3 NC_006548.1 + 30628 0.72 0.194114
Target:  5'- cGUGCUGAccUUgacgaccagccagaACCUGCGGCCgUUGGCg -3'
miRNA:   3'- aCACGACU--AG--------------UGGGCGUUGGgGACCG- -5'
30419 3' -57.3 NC_006548.1 + 12396 0.75 0.125162
Target:  5'- --cGCUGGUCACCUaCGACCgUUGGCu -3'
miRNA:   3'- acaCGACUAGUGGGcGUUGGgGACCG- -5'
30419 3' -57.3 NC_006548.1 + 9635 0.76 0.108464
Target:  5'- -aUGCacUGAUCGCgUGC-GCCCCUGGCg -3'
miRNA:   3'- acACG--ACUAGUGgGCGuUGGGGACCG- -5'
30419 3' -57.3 NC_006548.1 + 12260 0.77 0.096634
Target:  5'- cGUGCUGAU-GCCCGCucGCCCgUcGGCg -3'
miRNA:   3'- aCACGACUAgUGGGCGu-UGGGgA-CCG- -5'
30419 3' -57.3 NC_006548.1 + 28341 0.78 0.081154
Target:  5'- --cGUUGAcgaCGCCCGCAGCCCCUuuGGCc -3'
miRNA:   3'- acaCGACUa--GUGGGCGUUGGGGA--CCG- -5'
30419 3' -57.3 NC_006548.1 + 7092 0.78 0.081154
Target:  5'- cGUGCUGAUCACCaggGCcucgucacGCCCCaGGCg -3'
miRNA:   3'- aCACGACUAGUGGg--CGu-------UGGGGaCCG- -5'
30419 3' -57.3 NC_006548.1 + 6151 1.12 0.000208
Target:  5'- gUGUGCUGAUCACCCGCAACCCCUGGCg -3'
miRNA:   3'- -ACACGACUAGUGGGCGUUGGGGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.