miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30419 5' -53.1 NC_006548.1 + 18012 0.72 0.37741
Target:  5'- aUGCGGCUGGacgCuaugcacagcugcagGCGGUCAaggGCGAGCGa -3'
miRNA:   3'- cACGUUGACCa--G---------------UGCCAGU---UGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 29892 0.71 0.41176
Target:  5'- cUGCAugACUGGUCcggcgcuguGCGGcacgCGACGGGCGg -3'
miRNA:   3'- cACGU--UGACCAG---------UGCCa---GUUGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 24314 0.68 0.607086
Target:  5'- -gGCcg--GGUCugGGcCGGCGAGCGc -3'
miRNA:   3'- caCGuugaCCAGugCCaGUUGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 5595 0.66 0.687763
Target:  5'- -cGCAACUGGUUggcgAUGG-CGuCGAGCu -3'
miRNA:   3'- caCGUUGACCAG----UGCCaGUuGCUCGu -5'
30419 5' -53.1 NC_006548.1 + 34970 0.66 0.699151
Target:  5'- cUGCGcCUGGUCagccacgcacguGCGGa-GGCGAGCAa -3'
miRNA:   3'- cACGUuGACCAG------------UGCCagUUGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 17500 0.66 0.726166
Target:  5'- -gGCAACUGGacgacccaacugcgCACGcUCAuCGAGCAg -3'
miRNA:   3'- caCGUUGACCa-------------GUGCcAGUuGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 6114 1.09 0.000929
Target:  5'- aGUGCAACUGGUCACGGUCAACGAGCAg -3'
miRNA:   3'- -CACGUUGACCAGUGCCAGUUGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 21444 0.73 0.329621
Target:  5'- aUGCAAgUGGUgGCGGcCGGCG-GCAg -3'
miRNA:   3'- cACGUUgACCAgUGCCaGUUGCuCGU- -5'
30419 5' -53.1 NC_006548.1 + 29347 0.67 0.630187
Target:  5'- aGUG-AGCUGGUCgGCGGcCAGcCGGGUAu -3'
miRNA:   3'- -CACgUUGACCAG-UGCCaGUU-GCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 13270 0.66 0.710469
Target:  5'- gGUGCcGCUcGGUagGCGGUCGauacAUGGGCGa -3'
miRNA:   3'- -CACGuUGA-CCAg-UGCCAGU----UGCUCGU- -5'
30419 5' -53.1 NC_006548.1 + 30290 0.66 0.737258
Target:  5'- -cGCGACcaGGUCugGGUUcgcggugaggaacugGACGAGUc -3'
miRNA:   3'- caCGUUGa-CCAGugCCAG---------------UUGCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.