miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30422 3' -53.1 NC_006548.1 + 38228 0.73 0.313616
Target:  5'- cUCGGCCGauucuUGCGGGAggGCAUCGGCa -3'
miRNA:   3'- -AGUCGGCgu---ACGUCUUggCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 37849 0.68 0.575557
Target:  5'- cCAGCCGCAgauUGCAGAugCcagGguUCggUg -3'
miRNA:   3'- aGUCGGCGU---ACGUCUugG---CguAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 36954 0.69 0.485864
Target:  5'- gCAGCCGguUGC-GGugCGCccacgacacgGUCAGCa -3'
miRNA:   3'- aGUCGGCguACGuCUugGCG----------UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36910 0.66 0.702964
Target:  5'- cCGGCUGC-UGCAG-GCCGU--CAACu -3'
miRNA:   3'- aGUCGGCGuACGUCuUGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36694 0.75 0.226934
Target:  5'- cCGGCCuCAUGCGGcgcuggcACCGUAUCGACg -3'
miRNA:   3'- aGUCGGcGUACGUCu------UGGCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36637 0.75 0.233307
Target:  5'- cCGGCCGCG-GCGuuGAUCGCGUCGACg -3'
miRNA:   3'- aGUCGGCGUaCGUc-UUGGCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36541 0.73 0.321872
Target:  5'- cUCGGCCGCGaugaucgaUGacgAGAucuuCCGCGUCGACg -3'
miRNA:   3'- -AGUCGGCGU--------ACg--UCUu---GGCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36470 0.71 0.413188
Target:  5'- aUCGGCCGgG-GCcuGACCaGCGUCAGCg -3'
miRNA:   3'- -AGUCGGCgUaCGucUUGG-CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36392 0.69 0.530019
Target:  5'- cUCAGCCGCGUG-GGAuCUGCAcgguUCGAa -3'
miRNA:   3'- -AGUCGGCGUACgUCUuGGCGU----AGUUg -5'
30422 3' -53.1 NC_006548.1 + 36057 0.77 0.166157
Target:  5'- -gAGCCGCAccuggagcuUGCGGAuaGCCGaCGUCGACa -3'
miRNA:   3'- agUCGGCGU---------ACGUCU--UGGC-GUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 35945 0.67 0.656834
Target:  5'- aUCAcGCCGCcgGCcgcgcGGAUCGCGcCGGCa -3'
miRNA:   3'- -AGU-CGGCGuaCGu----CUUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 35747 0.67 0.656834
Target:  5'- aUCAGCCGCAgcgucCAGAGuCCG-GUCGAg -3'
miRNA:   3'- -AGUCGGCGUac---GUCUU-GGCgUAGUUg -5'
30422 3' -53.1 NC_006548.1 + 34352 0.67 0.645205
Target:  5'- gUAGCCGCc-GCGGAACCagGCGUUGGg -3'
miRNA:   3'- aGUCGGCGuaCGUCUUGG--CGUAGUUg -5'
30422 3' -53.1 NC_006548.1 + 34088 0.7 0.464448
Target:  5'- aCAGCCGgGUGCAGAucaaaugccgGCUGC-UCggUa -3'
miRNA:   3'- aGUCGGCgUACGUCU----------UGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 33656 0.7 0.453926
Target:  5'- aCAGCgacaGCGUGCAGAucacccacgaaACCgacaccgacgGCAUCAGCa -3'
miRNA:   3'- aGUCGg---CGUACGUCU-----------UGG----------CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 33511 0.66 0.680001
Target:  5'- aUCAGCC-C-UGaAGAACCGCGcCAGCc -3'
miRNA:   3'- -AGUCGGcGuACgUCUUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 33299 0.7 0.43226
Target:  5'- cCGGCCGCGaggagcaUGCGGcGCUGCG-CAGCc -3'
miRNA:   3'- aGUCGGCGU-------ACGUCuUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 32437 0.67 0.633564
Target:  5'- --cGCgGCGcUGCAGGAgCGCAUCugGACu -3'
miRNA:   3'- aguCGgCGU-ACGUCUUgGCGUAG--UUG- -5'
30422 3' -53.1 NC_006548.1 + 31509 0.67 0.603317
Target:  5'- cCuGCCGCgaucucgacgugcagGUGCAGAuagGCCGCcgUGGCa -3'
miRNA:   3'- aGuCGGCG---------------UACGUCU---UGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 30857 0.69 0.507738
Target:  5'- gCGGCCGuUAUGCGGGcagcagugaaGCCGUugucaAUCAGCu -3'
miRNA:   3'- aGUCGGC-GUACGUCU----------UGGCG-----UAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.