miRNA display CGI


Results 1 - 20 of 64 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30422 3' -53.1 NC_006548.1 + 32437 0.67 0.633564
Target:  5'- --cGCgGCGcUGCAGGAgCGCAUCugGACu -3'
miRNA:   3'- aguCGgCGU-ACGUCUUgGCGUAG--UUG- -5'
30422 3' -53.1 NC_006548.1 + 34088 0.7 0.464448
Target:  5'- aCAGCCGgGUGCAGAucaaaugccgGCUGC-UCggUa -3'
miRNA:   3'- aGUCGGCgUACGUCU----------UGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 4898 0.7 0.464448
Target:  5'- uUCGGCCGCuccagugGCGcAACCGCAgccaucauggcuUCGGCa -3'
miRNA:   3'- -AGUCGGCGua-----CGUcUUGGCGU------------AGUUG- -5'
30422 3' -53.1 NC_006548.1 + 30857 0.69 0.507738
Target:  5'- gCGGCCGuUAUGCGGGcagcagugaaGCCGUugucaAUCAGCu -3'
miRNA:   3'- aGUCGGC-GUACGUCU----------UGGCG-----UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36392 0.69 0.530019
Target:  5'- cUCAGCCGCGUG-GGAuCUGCAcgguUCGAa -3'
miRNA:   3'- -AGUCGGCGUACgUCUuGGCGU----AGUUg -5'
30422 3' -53.1 NC_006548.1 + 24457 0.68 0.541293
Target:  5'- -uGGCCGCuUGCAGcgcggcaaGACCGCcacuAUUAACa -3'
miRNA:   3'- agUCGGCGuACGUC--------UUGGCG----UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 20538 0.68 0.541293
Target:  5'- --cGCCGC-UGCGGAagaGCCGCAg-GGCa -3'
miRNA:   3'- aguCGGCGuACGUCU---UGGCGUagUUG- -5'
30422 3' -53.1 NC_006548.1 + 4300 0.67 0.610287
Target:  5'- gUCAGCaCG-GUGCAGAGCgGCAgaugggUAGCu -3'
miRNA:   3'- -AGUCG-GCgUACGUCUUGgCGUa-----GUUG- -5'
30422 3' -53.1 NC_006548.1 + 12586 0.67 0.633564
Target:  5'- cUCGGCCGCcaacuuccGCgAGAACCGCAa---- -3'
miRNA:   3'- -AGUCGGCGua------CG-UCUUGGCGUaguug -5'
30422 3' -53.1 NC_006548.1 + 33656 0.7 0.453926
Target:  5'- aCAGCgacaGCGUGCAGAucacccacgaaACCgacaccgacgGCAUCAGCa -3'
miRNA:   3'- aGUCGg---CGUACGUCU-----------UGG----------CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 18430 0.7 0.453926
Target:  5'- cCAGCaGCuucUGCAGAACCGC-UCggUg -3'
miRNA:   3'- aGUCGgCGu--ACGUCUUGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 18733 0.7 0.433279
Target:  5'- cCAGCCGCAgGCcGuGCUGC-UCGACg -3'
miRNA:   3'- aGUCGGCGUaCGuCuUGGCGuAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22543 0.74 0.274746
Target:  5'- aCAGCCGCcgGCGGAggagaGCCugAUCGACg -3'
miRNA:   3'- aGUCGGCGuaCGUCU-----UGGcgUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 38228 0.73 0.313616
Target:  5'- cUCGGCCGauucuUGCGGGAggGCAUCGGCa -3'
miRNA:   3'- -AGUCGGCgu---ACGUCUUggCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36541 0.73 0.321872
Target:  5'- cUCGGCCGCGaugaucgaUGacgAGAucuuCCGCGUCGACg -3'
miRNA:   3'- -AGUCGGCGU--------ACg--UCUu---GGCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 7006 0.71 0.374784
Target:  5'- aUCaAGCCGCuggcGCgaAGAuccucgACCGCAUCAGCa -3'
miRNA:   3'- -AG-UCGGCGua--CG--UCU------UGGCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 26986 0.71 0.393682
Target:  5'- -uGGCCGUAaGCuGAGCaGCGUCGGCg -3'
miRNA:   3'- agUCGGCGUaCGuCUUGgCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36470 0.71 0.413188
Target:  5'- aUCGGCCGgG-GCcuGACCaGCGUCAGCg -3'
miRNA:   3'- -AGUCGGCgUaCGucUUGG-CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 33299 0.7 0.43226
Target:  5'- cCGGCCGCGaggagcaUGCGGcGCUGCG-CAGCc -3'
miRNA:   3'- aGUCGGCGU-------ACGUCuUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22952 0.7 0.433279
Target:  5'- -uGGCCGCcgGCcucaAGGACCGCuUCAu- -3'
miRNA:   3'- agUCGGCGuaCG----UCUUGGCGuAGUug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.