miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30422 3' -53.1 NC_006548.1 + 33299 0.7 0.43226
Target:  5'- cCGGCCGCGaggagcaUGCGGcGCUGCG-CAGCc -3'
miRNA:   3'- aGUCGGCGU-------ACGUCuUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22952 0.7 0.433279
Target:  5'- -uGGCCGCcgGCcucaAGGACCGCuUCAu- -3'
miRNA:   3'- agUCGGCGuaCG----UCUUGGCGuAGUug -5'
30422 3' -53.1 NC_006548.1 + 18733 0.7 0.433279
Target:  5'- cCAGCCGCAgGCcGuGCUGC-UCGACg -3'
miRNA:   3'- aGUCGGCGUaCGuCuUGGCGuAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 18430 0.7 0.453926
Target:  5'- cCAGCaGCuucUGCAGAACCGC-UCggUg -3'
miRNA:   3'- aGUCGgCGu--ACGUCUUGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 33656 0.7 0.453926
Target:  5'- aCAGCgacaGCGUGCAGAucacccacgaaACCgacaccgacgGCAUCAGCa -3'
miRNA:   3'- aGUCGg---CGUACGUCU-----------UGG----------CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 36954 0.69 0.485864
Target:  5'- gCAGCCGguUGC-GGugCGCccacgacacgGUCAGCa -3'
miRNA:   3'- aGUCGGCguACGuCUugGCG----------UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22201 0.69 0.507738
Target:  5'- uUCAGCCGCGcuucgccgaUGUAGA-UCGCGUCc-- -3'
miRNA:   3'- -AGUCGGCGU---------ACGUCUuGGCGUAGuug -5'
30422 3' -53.1 NC_006548.1 + 28852 0.68 0.541293
Target:  5'- uUCuGCCGCAUcCAGggUCGCccaggCGGCg -3'
miRNA:   3'- -AGuCGGCGUAcGUCuuGGCGua---GUUG- -5'
30422 3' -53.1 NC_006548.1 + 21432 0.68 0.564072
Target:  5'- gCGGCCgGCG-GCAGAGUCGCggCAACc -3'
miRNA:   3'- aGUCGG-CGUaCGUCUUGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 37849 0.68 0.575557
Target:  5'- cCAGCCGCAgauUGCAGAugCcagGguUCggUg -3'
miRNA:   3'- aGUCGGCGU---ACGUCUugG---CguAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 1880 0.67 0.598675
Target:  5'- --cGCUGCAgaGCAGAGCUGCgAUgAACa -3'
miRNA:   3'- aguCGGCGUa-CGUCUUGGCG-UAgUUG- -5'
30422 3' -53.1 NC_006548.1 + 30598 0.67 0.598675
Target:  5'- gCGGCCGUugGCgaAGAACCaguaggGCAUCGGCu -3'
miRNA:   3'- aGUCGGCGuaCG--UCUUGG------CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 15843 0.67 0.598675
Target:  5'- cCGGUgGCGucgaUGCAGAugCGCucaCAGCg -3'
miRNA:   3'- aGUCGgCGU----ACGUCUugGCGua-GUUG- -5'
30422 3' -53.1 NC_006548.1 + 31509 0.67 0.603317
Target:  5'- cCuGCCGCgaucucgacgugcagGUGCAGAuagGCCGCcgUGGCa -3'
miRNA:   3'- aGuCGGCG---------------UACGUCU---UGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 12999 0.67 0.610287
Target:  5'- --cGCCGCA--CAGcACCGCGcUCAGCg -3'
miRNA:   3'- aguCGGCGUacGUCuUGGCGU-AGUUG- -5'
30422 3' -53.1 NC_006548.1 + 4241 0.67 0.610287
Target:  5'- cCGGCUGUucauucGUGCGGAagacgcaccacGCCuGUAUCAGCg -3'
miRNA:   3'- aGUCGGCG------UACGUCU-----------UGG-CGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 34352 0.67 0.645205
Target:  5'- gUAGCCGCc-GCGGAACCagGCGUUGGg -3'
miRNA:   3'- aGUCGGCGuaCGUCUUGG--CGUAGUUg -5'
30422 3' -53.1 NC_006548.1 + 28095 0.67 0.656834
Target:  5'- -aGGCCuCcUGCAGGGCCGCGcCGAa -3'
miRNA:   3'- agUCGGcGuACGUCUUGGCGUaGUUg -5'
30422 3' -53.1 NC_006548.1 + 35945 0.67 0.656834
Target:  5'- aUCAcGCCGCcgGCcgcgcGGAUCGCGcCGGCa -3'
miRNA:   3'- -AGU-CGGCGuaCGu----CUUGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 35747 0.67 0.656834
Target:  5'- aUCAGCCGCAgcgucCAGAGuCCG-GUCGAg -3'
miRNA:   3'- -AGUCGGCGUac---GUCUU-GGCgUAGUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.