miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30422 3' -53.1 NC_006548.1 + 18430 0.7 0.453926
Target:  5'- cCAGCaGCuucUGCAGAACCGC-UCggUg -3'
miRNA:   3'- aGUCGgCGu--ACGUCUUGGCGuAGuuG- -5'
30422 3' -53.1 NC_006548.1 + 18733 0.7 0.433279
Target:  5'- cCAGCCGCAgGCcGuGCUGC-UCGACg -3'
miRNA:   3'- aGUCGGCGUaCGuCuUGGCGuAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 19685 0.66 0.702964
Target:  5'- uUCAGgCGCGUucGCGGAGCgCGCGcugCAGa -3'
miRNA:   3'- -AGUCgGCGUA--CGUCUUG-GCGUa--GUUg -5'
30422 3' -53.1 NC_006548.1 + 20538 0.68 0.541293
Target:  5'- --cGCCGC-UGCGGAagaGCCGCAg-GGCa -3'
miRNA:   3'- aguCGGCGuACGUCU---UGGCGUagUUG- -5'
30422 3' -53.1 NC_006548.1 + 20583 0.72 0.346728
Target:  5'- gCAGCgGCG-GCAGAggcugcuGCgGCGUCGACg -3'
miRNA:   3'- aGUCGgCGUaCGUCU-------UGgCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 20792 0.67 0.633564
Target:  5'- cCGGCCGCcUGCu--GCCGCGcCAGa -3'
miRNA:   3'- aGUCGGCGuACGucuUGGCGUaGUUg -5'
30422 3' -53.1 NC_006548.1 + 20947 0.66 0.680001
Target:  5'- cUCGGCCGCcgGCuuuguGAccugGCCGUcgcccUCGGCg -3'
miRNA:   3'- -AGUCGGCGuaCGu----CU----UGGCGu----AGUUG- -5'
30422 3' -53.1 NC_006548.1 + 21432 0.68 0.564072
Target:  5'- gCGGCCgGCG-GCAGAGUCGCggCAACc -3'
miRNA:   3'- aGUCGG-CGUaCGUCUUGGCGuaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22201 0.69 0.507738
Target:  5'- uUCAGCCGCGcuucgccgaUGUAGA-UCGCGUCc-- -3'
miRNA:   3'- -AGUCGGCGU---------ACGUCUuGGCGUAGuug -5'
30422 3' -53.1 NC_006548.1 + 22484 0.66 0.680001
Target:  5'- gCGGCCGCccaGUGaGGAuuaaGCCGCGaCGGCg -3'
miRNA:   3'- aGUCGGCG---UACgUCU----UGGCGUaGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22543 0.74 0.274746
Target:  5'- aCAGCCGCcgGCGGAggagaGCCugAUCGACg -3'
miRNA:   3'- aGUCGGCGuaCGUCU-----UGGcgUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 22952 0.7 0.433279
Target:  5'- -uGGCCGCcgGCcucaAGGACCGCuUCAu- -3'
miRNA:   3'- agUCGGCGuaCG----UCUUGGCGuAGUug -5'
30422 3' -53.1 NC_006548.1 + 24457 0.68 0.541293
Target:  5'- -uGGCCGCuUGCAGcgcggcaaGACCGCcacuAUUAACa -3'
miRNA:   3'- agUCGGCGuACGUC--------UUGGCG----UAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 26483 0.79 0.127738
Target:  5'- cUCAGCCGCA-GguGAGCCGCGaCAGu -3'
miRNA:   3'- -AGUCGGCGUaCguCUUGGCGUaGUUg -5'
30422 3' -53.1 NC_006548.1 + 26986 0.71 0.393682
Target:  5'- -uGGCCGUAaGCuGAGCaGCGUCGGCg -3'
miRNA:   3'- agUCGGCGUaCGuCUUGgCGUAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 27329 0.7 0.464448
Target:  5'- gCGGCCGCAuccUGCuuGGCUGUuUCAGCa -3'
miRNA:   3'- aGUCGGCGU---ACGucUUGGCGuAGUUG- -5'
30422 3' -53.1 NC_006548.1 + 28095 0.67 0.656834
Target:  5'- -aGGCCuCcUGCAGGGCCGCGcCGAa -3'
miRNA:   3'- agUCGGcGuACGUCUUGGCGUaGUUg -5'
30422 3' -53.1 NC_006548.1 + 28590 0.7 0.475095
Target:  5'- -uGGCCgGCGccgaGCAGGACUGCGUCAc- -3'
miRNA:   3'- agUCGG-CGUa---CGUCUUGGCGUAGUug -5'
30422 3' -53.1 NC_006548.1 + 28852 0.68 0.541293
Target:  5'- uUCuGCCGCAUcCAGggUCGCccaggCGGCg -3'
miRNA:   3'- -AGuCGGCGUAcGUCuuGGCGua---GUUG- -5'
30422 3' -53.1 NC_006548.1 + 29101 0.66 0.668436
Target:  5'- -aGGCCGCccaGCAG-GCCGgucuCGUCAGCg -3'
miRNA:   3'- agUCGGCGua-CGUCuUGGC----GUAGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.