Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30422 | 3' | -53.1 | NC_006548.1 | + | 8373 | 1.11 | 0.00059 |
Target: 5'- gUCAGCCGCAUGCAGAACCGCAUCAACg -3' miRNA: 3'- -AGUCGGCGUACGUCUUGGCGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 28590 | 0.7 | 0.475095 |
Target: 5'- -uGGCCgGCGccgaGCAGGACUGCGUCAc- -3' miRNA: 3'- agUCGG-CGUa---CGUCUUGGCGUAGUug -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 14374 | 0.7 | 0.479388 |
Target: 5'- uUCGGCCuggcucgggaacugcGCcUGCAGGuCCGCgAUCAGCu -3' miRNA: 3'- -AGUCGG---------------CGuACGUCUuGGCG-UAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 19685 | 0.66 | 0.702964 |
Target: 5'- uUCAGgCGCGUucGCGGAGCgCGCGcugCAGa -3' miRNA: 3'- -AGUCgGCGUA--CGUCUUG-GCGUa--GUUg -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 36057 | 0.77 | 0.166157 |
Target: 5'- -gAGCCGCAccuggagcuUGCGGAuaGCCGaCGUCGACa -3' miRNA: 3'- agUCGGCGU---------ACGUCU--UGGC-GUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 36694 | 0.75 | 0.226934 |
Target: 5'- cCGGCCuCAUGCGGcgcuggcACCGUAUCGACg -3' miRNA: 3'- aGUCGGcGUACGUCu------UGGCGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 36637 | 0.75 | 0.233307 |
Target: 5'- cCGGCCGCG-GCGuuGAUCGCGUCGACg -3' miRNA: 3'- aGUCGGCGUaCGUc-UUGGCGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 896 | 0.73 | 0.313616 |
Target: 5'- -gAGCCGCcgGCA-AGCCGCAuaacuUCAGCc -3' miRNA: 3'- agUCGGCGuaCGUcUUGGCGU-----AGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 13037 | 0.72 | 0.356509 |
Target: 5'- aCGGUCGUAgcuUGCGGAGCCGUggAUCAccACg -3' miRNA: 3'- aGUCGGCGU---ACGUCUUGGCG--UAGU--UG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 27329 | 0.7 | 0.464448 |
Target: 5'- gCGGCCGCAuccUGCuuGGCUGUuUCAGCa -3' miRNA: 3'- aGUCGGCGU---ACGucUUGGCGuAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 12149 | 0.7 | 0.443534 |
Target: 5'- cCGGCCaGCA-GCAGGA--GCAUCAGCg -3' miRNA: 3'- aGUCGG-CGUaCGUCUUggCGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 20583 | 0.72 | 0.346728 |
Target: 5'- gCAGCgGCG-GCAGAggcugcuGCgGCGUCGACg -3' miRNA: 3'- aGUCGgCGUaCGUCU-------UGgCGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 7665 | 0.8 | 0.100658 |
Target: 5'- cCAGCgCGCG-GCAGAGCUGCGUCAGg -3' miRNA: 3'- aGUCG-GCGUaCGUCUUGGCGUAGUUg -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 12198 | 0.7 | 0.443534 |
Target: 5'- cUCGGCgGCccGCGGGAUCuCAUCGGCc -3' miRNA: 3'- -AGUCGgCGuaCGUCUUGGcGUAGUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 3878 | 0.8 | 0.103722 |
Target: 5'- -aAGCUGCAUGCGGAGCUGCAgugCAugGCg -3' miRNA: 3'- agUCGGCGUACGUCUUGGCGUa--GU--UG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 7276 | 0.73 | 0.321039 |
Target: 5'- gCAGCCGCG-GCAGAGCUgggccugucgcugGCAUCGc- -3' miRNA: 3'- aGUCGGCGUaCGUCUUGG-------------CGUAGUug -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 29726 | 0.7 | 0.464448 |
Target: 5'- gCAGCCGCAccUGCcgcaccGGcACCGCuggCAGCg -3' miRNA: 3'- aGUCGGCGU--ACG------UCuUGGCGua-GUUG- -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 18059 | 0.7 | 0.475095 |
Target: 5'- cCAGCCGCAUaGCuGGugCGCAgauUCGu- -3' miRNA: 3'- aGUCGGCGUA-CGuCUugGCGU---AGUug -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 26483 | 0.79 | 0.127738 |
Target: 5'- cUCAGCCGCA-GguGAGCCGCGaCAGu -3' miRNA: 3'- -AGUCGGCGUaCguCUUGGCGUaGUUg -5' |
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30422 | 3' | -53.1 | NC_006548.1 | + | 16994 | 0.75 | 0.233307 |
Target: 5'- aUCAGUCuguaugGCAUGCAGGGCCGCcagUAGCu -3' miRNA: 3'- -AGUCGG------CGUACGUCUUGGCGua-GUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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