miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30423 3' -53.4 NC_006548.1 + 33876 0.68 0.610992
Target:  5'- gGCCgGUGAgCGA-CGAUGGaCGGCGCa -3'
miRNA:   3'- -CGGgCACUaGUUaGCUGUCcGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 35092 0.66 0.744663
Target:  5'- aGCUgGUcgaGAUCAa--GGCAGGUGAuCGCa -3'
miRNA:   3'- -CGGgCA---CUAGUuagCUGUCCGCU-GCG- -5'
30423 3' -53.4 NC_006548.1 + 35249 0.67 0.712044
Target:  5'- aCCgGUGaAUCc-UCGACuGGCGGCGa -3'
miRNA:   3'- cGGgCAC-UAGuuAGCUGuCCGCUGCg -5'
30423 3' -53.4 NC_006548.1 + 35709 0.66 0.733894
Target:  5'- aUCCGUGA-CGAcuaCGACGucGCGACGCu -3'
miRNA:   3'- cGGGCACUaGUUa--GCUGUc-CGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 35861 0.67 0.675313
Target:  5'- uGCCCGUGcgaagaaugccggcgCGAUccgcgCGGCcGGCGGCGUg -3'
miRNA:   3'- -CGGGCACua-------------GUUA-----GCUGuCCGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 36276 0.73 0.363393
Target:  5'- -aCCGUGAUCucgCGGCGGcacugaGCGAUGCa -3'
miRNA:   3'- cgGGCACUAGuuaGCUGUC------CGCUGCG- -5'
30423 3' -53.4 NC_006548.1 + 37408 0.73 0.337564
Target:  5'- gGCCUGgccgcUAGUCGGCAgcguGGCGACGCg -3'
miRNA:   3'- -CGGGCacua-GUUAGCUGU----CCGCUGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.