miRNA display CGI


Results 41 - 60 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 27085 0.75 0.103052
Target:  5'- uGCUgCGGCAGCcaguaCGCAGCGCCUCa -3'
miRNA:   3'- gCGA-GCCGUUGuacg-GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 27169 0.71 0.196862
Target:  5'- cCGCUUgcacagcagcauugaGGCGcuGCGuacuggcUGCCGCAGCAUCCUg -3'
miRNA:   3'- -GCGAG---------------CCGU--UGU-------ACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 27286 0.67 0.387074
Target:  5'- cCGcCUCGGCAGCGcGuuGCucGGuCGCCgCCu -3'
miRNA:   3'- -GC-GAGCCGUUGUaCggCG--UC-GUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 27410 0.69 0.254366
Target:  5'- uGCUCGGuCAAC-UGCCGCucCugCUCg -3'
miRNA:   3'- gCGAGCC-GUUGuACGGCGucGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 28141 0.68 0.303946
Target:  5'- aGUUCGGCcuGCAgGCCGCcAGcCGCCUg -3'
miRNA:   3'- gCGAGCCGu-UGUaCGGCG-UC-GUGGGg -5'
30424 3' -58.8 NC_006548.1 + 28538 0.76 0.091923
Target:  5'- uGCUCGGCGcCGgccagGUCGCGGCGCuaCCCg -3'
miRNA:   3'- gCGAGCCGUuGUa----CGGCGUCGUG--GGG- -5'
30424 3' -58.8 NC_006548.1 + 29738 0.67 0.387074
Target:  5'- cCGCcacuacCGGCAGCcgcaccUGCCGCaccGGCACCgCu -3'
miRNA:   3'- -GCGa-----GCCGUUGu-----ACGGCG---UCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 30573 0.69 0.261021
Target:  5'- gGCaUCGGCugguucCAUGCCaGCAguuGCACCCg -3'
miRNA:   3'- gCG-AGCCGuu----GUACGG-CGU---CGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 32478 0.66 0.433894
Target:  5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3'
miRNA:   3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 32854 0.66 0.412885
Target:  5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3'
miRNA:   3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 33386 0.68 0.335462
Target:  5'- aCGCagGGCGuACAgcagGCugCGCAGCGCCgCa -3'
miRNA:   3'- -GCGagCCGU-UGUa---CG--GCGUCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 33654 0.72 0.165879
Target:  5'- uCGCUCGGCcgGACAacggUGCC-CAGCGCgCUg -3'
miRNA:   3'- -GCGAGCCG--UUGU----ACGGcGUCGUGgGG- -5'
30424 3' -58.8 NC_006548.1 + 35200 0.69 0.279697
Target:  5'- aGggCGGCAuCGUuggGCCGCuggacgucauguucGGCGCCCCg -3'
miRNA:   3'- gCgaGCCGUuGUA---CGGCG--------------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36177 0.67 0.360625
Target:  5'- uGC-CGGCAGCcgGgacguCCGCAGUccaGCCgCCg -3'
miRNA:   3'- gCGaGCCGUUGuaC-----GGCGUCG---UGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 36253 0.66 0.424267
Target:  5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3'
miRNA:   3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36407 0.67 0.3693
Target:  5'- cCGgaCGGCcGCAUGCC-CAGCGCa-- -3'
miRNA:   3'- -GCgaGCCGuUGUACGGcGUCGUGggg -5'
30424 3' -58.8 NC_006548.1 + 36697 0.67 0.378117
Target:  5'- gCGC-CGGCcuCAUGCgGCgcuGGCACCg- -3'
miRNA:   3'- -GCGaGCCGuuGUACGgCG---UCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 36752 0.75 0.109081
Target:  5'- aGCUCGGCGAC--GCuCGCAGagaGCCUCg -3'
miRNA:   3'- gCGAGCCGUUGuaCG-GCGUCg--UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37401 0.76 0.08194
Target:  5'- cCGCuagUCGGCAGCGUGgCGaC-GCGCCCCu -3'
miRNA:   3'- -GCG---AGCCGUUGUACgGC-GuCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37517 0.65 0.442666
Target:  5'- aGCcgUGGCGGCAUGUacucccaaauuggCGUacuGGCACCCg -3'
miRNA:   3'- gCGa-GCCGUUGUACG-------------GCG---UCGUGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.