miRNA display CGI


Results 21 - 40 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 17072 0.7 0.223165
Target:  5'- gGCUCGGCcAgGUGgCGaguacccagGGCACCCCc -3'
miRNA:   3'- gCGAGCCGuUgUACgGCg--------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 17451 0.67 0.3693
Target:  5'- aGCagCGGCGAUGgcGCCGCAGCugGCCg- -3'
miRNA:   3'- gCGa-GCCGUUGUa-CGGCGUCG--UGGgg -5'
30424 3' -58.8 NC_006548.1 + 17522 0.67 0.387074
Target:  5'- uCGCuUCGGC--CA-GCUGCGGCGCCa- -3'
miRNA:   3'- -GCG-AGCCGuuGUaCGGCGUCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 18655 0.71 0.195278
Target:  5'- aGCcaUGGCGACAaccGCCGCAggGCugCCCa -3'
miRNA:   3'- gCGa-GCCGUUGUa--CGGCGU--CGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 19198 0.66 0.414769
Target:  5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3'
miRNA:   3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 20131 0.83 0.026099
Target:  5'- gGCUCGGCAuagaGCAUGCCGUcgcGCACCuCCa -3'
miRNA:   3'- gCGAGCCGU----UGUACGGCGu--CGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 20226 0.67 0.378117
Target:  5'- -cCUCGGUGcCGUGCCGCcggccaucaaaGGCAUUCCc -3'
miRNA:   3'- gcGAGCCGUuGUACGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 20585 0.68 0.296431
Target:  5'- cCGCagCGGCGGCAgaggcUGCUGCGGCgucgACgCCu -3'
miRNA:   3'- -GCGa-GCCGUUGU-----ACGGCGUCG----UGgGG- -5'
30424 3' -58.8 NC_006548.1 + 20973 0.77 0.068885
Target:  5'- aGUUCGGcCAGCAaGCugCGCAGCACCUCg -3'
miRNA:   3'- gCGAGCC-GUUGUaCG--GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 21186 0.72 0.175209
Target:  5'- aGCUCGGaCGGCcugGCCGCccaGGCugCCg -3'
miRNA:   3'- gCGAGCC-GUUGua-CGGCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 21430 0.73 0.136648
Target:  5'- gGC-CGGCGGCAgaGUCGCGGCaaccgcucGCCCCu -3'
miRNA:   3'- gCGaGCCGUUGUa-CGGCGUCG--------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 21997 0.66 0.39617
Target:  5'- cCGaacaUCGGCGuGCuggGCCGUcGCACCgCCa -3'
miRNA:   3'- -GCg---AGCCGU-UGua-CGGCGuCGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 23760 0.71 0.200601
Target:  5'- aGUUCGGCGGC--GCCGCccacgugcuugAGCACCUUg -3'
miRNA:   3'- gCGAGCCGUUGuaCGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 23804 0.67 0.3693
Target:  5'- cCGC-CGGC--CAUGCCGgUGGCGCgaCCCg -3'
miRNA:   3'- -GCGaGCCGuuGUACGGC-GUCGUG--GGG- -5'
30424 3' -58.8 NC_006548.1 + 25040 0.65 0.442666
Target:  5'- gGCgUCGGCGGCguucaagGUGUCGUacAGCACacugCCCg -3'
miRNA:   3'- gCG-AGCCGUUG-------UACGGCG--UCGUG----GGG- -5'
30424 3' -58.8 NC_006548.1 + 25717 0.66 0.414769
Target:  5'- uGCUggagCGGCAACuccaguaccugGUGCCGaacaGGCAaCCCa -3'
miRNA:   3'- gCGA----GCCGUUG-----------UACGGCg---UCGUgGGG- -5'
30424 3' -58.8 NC_006548.1 + 25789 0.71 0.195278
Target:  5'- uGUUCGGCAcCAgguacuggaguUGCCGCuccAGCACCUg -3'
miRNA:   3'- gCGAGCCGUuGU-----------ACGGCG---UCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 26174 0.71 0.19008
Target:  5'- cCGC-CGGC-ACcgGCCGUAGgaagaacagugcCGCCCCa -3'
miRNA:   3'- -GCGaGCCGuUGuaCGGCGUC------------GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 26827 0.67 0.343705
Target:  5'- gCGCgaggauugCGGCAACcccauUGCCGUAGU-CCUCu -3'
miRNA:   3'- -GCGa-------GCCGUUGu----ACGGCGUCGuGGGG- -5'
30424 3' -58.8 NC_006548.1 + 27020 0.67 0.390696
Target:  5'- uGCUCGGCcu--UGUCGCcuacguccuggacagAGCcCCCCa -3'
miRNA:   3'- gCGAGCCGuuguACGGCG---------------UCGuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.