miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 767 0.67 0.352093
Target:  5'- aGCUCcagGGCAGCcucaucucgGCCaGCuGCGCCUCg -3'
miRNA:   3'- gCGAG---CCGUUGua-------CGG-CGuCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 1477 0.66 0.424267
Target:  5'- uCGC-CGGCAGuggaGUgGUAGCGCUCCa -3'
miRNA:   3'- -GCGaGCCGUUgua-CGgCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 2799 0.69 0.261021
Target:  5'- cCGUacCGGCAGCGUGCuUGCccuGCGCCgCCu -3'
miRNA:   3'- -GCGa-GCCGUUGUACG-GCGu--CGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 3307 0.66 0.405402
Target:  5'- gGCUCGGguCAugA-GCUGCAGaGCCCg -3'
miRNA:   3'- gCGAGCC--GUugUaCGGCGUCgUGGGg -5'
30424 3' -58.8 NC_006548.1 + 6878 0.69 0.267817
Target:  5'- aGUUCGGUGACcgGCUcCGGCGCCa- -3'
miRNA:   3'- gCGAGCCGUUGuaCGGcGUCGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 7206 0.66 0.433894
Target:  5'- uGC-CaGCGACAggcccagcucUGCCGCGGCugCUUu -3'
miRNA:   3'- gCGaGcCGUUGU----------ACGGCGUCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 7524 0.7 0.217329
Target:  5'- uGCUCGGcCAACuugGCgaagccuucaCGCAGUugCCCc -3'
miRNA:   3'- gCGAGCC-GUUGua-CG----------GCGUCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 7693 0.69 0.289061
Target:  5'- -uCUCGGUggUGUugGCCaGCAgGCGCCCCu -3'
miRNA:   3'- gcGAGCCGuuGUA--CGG-CGU-CGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 8423 0.71 0.200601
Target:  5'- uCGCUCacaGCGucaGCAUGCUGCAGauaGCCCa -3'
miRNA:   3'- -GCGAGc--CGU---UGUACGGCGUCg--UGGGg -5'
30424 3' -58.8 NC_006548.1 + 8693 0.71 0.19008
Target:  5'- uGC-CGGCAugGaaaGCCaGgAGCGCCCCa -3'
miRNA:   3'- gCGaGCCGUugUa--CGG-CgUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 9310 0.68 0.319412
Target:  5'- uGCUCagccgGGCGAUAUGUgGCAaauGCCCCa -3'
miRNA:   3'- gCGAG-----CCGUUGUACGgCGUcg-UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 9420 1.11 0.000179
Target:  5'- cCGCUCGGCAACAUGCCGCAGCACCCCu -3'
miRNA:   3'- -GCGAGCCGUUGUACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 9642 0.66 0.433894
Target:  5'- gCGCUCGau-GCAcUGaUCGCGuGCGCCCCu -3'
miRNA:   3'- -GCGAGCcguUGU-AC-GGCGU-CGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 11878 0.66 0.404473
Target:  5'- uGCUCGGcCAACcuggaggucguagGUGCCugGCuGCGCCgCu -3'
miRNA:   3'- gCGAGCC-GUUG-------------UACGG--CGuCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 12200 0.7 0.217329
Target:  5'- uGCUCGGCGGC---CCGCGGgAUCUCa -3'
miRNA:   3'- gCGAGCCGUUGuacGGCGUCgUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 14366 0.67 0.360625
Target:  5'- gGCUCGGgAACugcGCCuGCAGguCCgCg -3'
miRNA:   3'- gCGAGCCgUUGua-CGG-CGUCguGGgG- -5'
30424 3' -58.8 NC_006548.1 + 14543 0.74 0.118748
Target:  5'- aGCUCGGacuggauCAUcGCCGuCAGCGCCUCg -3'
miRNA:   3'- gCGAGCCguu----GUA-CGGC-GUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 15464 0.79 0.05456
Target:  5'- gGC-CGGCAGCAucUGCUGCAGCuugaagaggaACCCCu -3'
miRNA:   3'- gCGaGCCGUUGU--ACGGCGUCG----------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 15683 0.67 0.343705
Target:  5'- uGCUCGGCGAUGUGCUcUAuacGCGCCa- -3'
miRNA:   3'- gCGAGCCGUUGUACGGcGU---CGUGGgg -5'
30424 3' -58.8 NC_006548.1 + 15842 0.68 0.319412
Target:  5'- aGUUCGGCGAgcacCGUGUCGaGGCugugaccuucACCCCg -3'
miRNA:   3'- gCGAGCCGUU----GUACGGCgUCG----------UGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.