miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 17451 0.67 0.3693
Target:  5'- aGCagCGGCGAUGgcGCCGCAGCugGCCg- -3'
miRNA:   3'- gCGa-GCCGUUGUa-CGGCGUCG--UGGgg -5'
30424 3' -58.8 NC_006548.1 + 36752 0.75 0.109081
Target:  5'- aGCUCGGCGAC--GCuCGCAGagaGCCUCg -3'
miRNA:   3'- gCGAGCCGUUGuaCG-GCGUCg--UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 15842 0.68 0.319412
Target:  5'- aGUUCGGCGAgcacCGUGUCGaGGCugugaccuucACCCCg -3'
miRNA:   3'- gCGAGCCGUU----GUACGGCgUCG----------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 8693 0.71 0.19008
Target:  5'- uGC-CGGCAugGaaaGCCaGgAGCGCCCCa -3'
miRNA:   3'- gCGaGCCGUugUa--CGG-CgUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 18655 0.71 0.195278
Target:  5'- aGCcaUGGCGACAaccGCCGCAggGCugCCCa -3'
miRNA:   3'- gCGa-GCCGUUGUa--CGGCGU--CGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 7524 0.7 0.217329
Target:  5'- uGCUCGGcCAACuugGCgaagccuucaCGCAGUugCCCc -3'
miRNA:   3'- gCGAGCC-GUUGua-CG----------GCGUCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 21186 0.72 0.175209
Target:  5'- aGCUCGGaCGGCcugGCCGCccaGGCugCCg -3'
miRNA:   3'- gCGAGCC-GUUGua-CGGCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 26827 0.67 0.343705
Target:  5'- gCGCgaggauugCGGCAACcccauUGCCGUAGU-CCUCu -3'
miRNA:   3'- -GCGa-------GCCGUUGu----ACGGCGUCGuGGGG- -5'
30424 3' -58.8 NC_006548.1 + 767 0.67 0.352093
Target:  5'- aGCUCcagGGCAGCcucaucucgGCCaGCuGCGCCUCg -3'
miRNA:   3'- gCGAG---CCGUUGua-------CGG-CGuCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36177 0.67 0.360625
Target:  5'- uGC-CGGCAGCcgGgacguCCGCAGUccaGCCgCCg -3'
miRNA:   3'- gCGaGCCGUUGuaC-----GGCGUCG---UGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 27085 0.75 0.103052
Target:  5'- uGCUgCGGCAGCcaguaCGCAGCGCCUCa -3'
miRNA:   3'- gCGA-GCCGUUGuacg-GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 23804 0.67 0.3693
Target:  5'- cCGC-CGGC--CAUGCCGgUGGCGCgaCCCg -3'
miRNA:   3'- -GCGaGCCGuuGUACGGC-GUCGUG--GGG- -5'
30424 3' -58.8 NC_006548.1 + 20226 0.67 0.378117
Target:  5'- -cCUCGGUGcCGUGCCGCcggccaucaaaGGCAUUCCc -3'
miRNA:   3'- gcGAGCCGUuGUACGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 21997 0.66 0.39617
Target:  5'- cCGaacaUCGGCGuGCuggGCCGUcGCACCgCCa -3'
miRNA:   3'- -GCg---AGCCGU-UGua-CGGCGuCGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 11878 0.66 0.404473
Target:  5'- uGCUCGGcCAACcuggaggucguagGUGCCugGCuGCGCCgCu -3'
miRNA:   3'- gCGAGCC-GUUG-------------UACGG--CGuCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 3307 0.66 0.405402
Target:  5'- gGCUCGGguCAugA-GCUGCAGaGCCCg -3'
miRNA:   3'- gCGAGCC--GUugUaCGGCGUCgUGGGg -5'
30424 3' -58.8 NC_006548.1 + 25717 0.66 0.414769
Target:  5'- uGCUggagCGGCAACuccaguaccugGUGCCGaacaGGCAaCCCa -3'
miRNA:   3'- gCGA----GCCGUUG-----------UACGGCg---UCGUgGGG- -5'
30424 3' -58.8 NC_006548.1 + 1477 0.66 0.424267
Target:  5'- uCGC-CGGCAGuggaGUgGUAGCGCUCCa -3'
miRNA:   3'- -GCGaGCCGUUgua-CGgCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 7206 0.66 0.433894
Target:  5'- uGC-CaGCGACAggcccagcucUGCCGCGGCugCUUu -3'
miRNA:   3'- gCGaGcCGUUGU----------ACGGCGUCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 28538 0.76 0.091923
Target:  5'- uGCUCGGCGcCGgccagGUCGCGGCGCuaCCCg -3'
miRNA:   3'- gCGAGCCGUuGUa----CGGCGUCGUG--GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.