Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30424 | 3' | -58.8 | NC_006548.1 | + | 21997 | 0.66 | 0.39617 |
Target: 5'- cCGaacaUCGGCGuGCuggGCCGUcGCACCgCCa -3' miRNA: 3'- -GCg---AGCCGU-UGua-CGGCGuCGUGG-GG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 15842 | 0.68 | 0.319412 |
Target: 5'- aGUUCGGCGAgcacCGUGUCGaGGCugugaccuucACCCCg -3' miRNA: 3'- gCGAGCCGUU----GUACGGCgUCG----------UGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 15683 | 0.67 | 0.343705 |
Target: 5'- uGCUCGGCGAUGUGCUcUAuacGCGCCa- -3' miRNA: 3'- gCGAGCCGUUGUACGGcGU---CGUGGgg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 26827 | 0.67 | 0.343705 |
Target: 5'- gCGCgaggauugCGGCAACcccauUGCCGUAGU-CCUCu -3' miRNA: 3'- -GCGa-------GCCGUUGu----ACGGCGUCGuGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 767 | 0.67 | 0.352093 |
Target: 5'- aGCUCcagGGCAGCcucaucucgGCCaGCuGCGCCUCg -3' miRNA: 3'- gCGAG---CCGUUGua-------CGG-CGuCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36177 | 0.67 | 0.360625 |
Target: 5'- uGC-CGGCAGCcgGgacguCCGCAGUccaGCCgCCg -3' miRNA: 3'- gCGaGCCGUUGuaC-----GGCGUCG---UGG-GG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 17451 | 0.67 | 0.3693 |
Target: 5'- aGCagCGGCGAUGgcGCCGCAGCugGCCg- -3' miRNA: 3'- gCGa-GCCGUUGUa-CGGCGUCG--UGGgg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 23804 | 0.67 | 0.3693 |
Target: 5'- cCGC-CGGC--CAUGCCGgUGGCGCgaCCCg -3' miRNA: 3'- -GCGaGCCGuuGUACGGC-GUCGUG--GGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 20226 | 0.67 | 0.378117 |
Target: 5'- -cCUCGGUGcCGUGCCGCcggccaucaaaGGCAUUCCc -3' miRNA: 3'- gcGAGCCGUuGUACGGCG-----------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 9310 | 0.68 | 0.319412 |
Target: 5'- uGCUCagccgGGCGAUAUGUgGCAaauGCCCCa -3' miRNA: 3'- gCGAG-----CCGUUGUACGgCGUcg-UGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 7693 | 0.69 | 0.289061 |
Target: 5'- -uCUCGGUggUGUugGCCaGCAgGCGCCCCu -3' miRNA: 3'- gcGAGCCGuuGUA--CGG-CGU-CGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 35200 | 0.69 | 0.279697 |
Target: 5'- aGggCGGCAuCGUuggGCCGCuggacgucauguucGGCGCCCCg -3' miRNA: 3'- gCgaGCCGUuGUA---CGGCG--------------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 27085 | 0.75 | 0.103052 |
Target: 5'- uGCUgCGGCAGCcaguaCGCAGCGCCUCa -3' miRNA: 3'- gCGA-GCCGUUGuacg-GCGUCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36752 | 0.75 | 0.109081 |
Target: 5'- aGCUCGGCGAC--GCuCGCAGagaGCCUCg -3' miRNA: 3'- gCGAGCCGUUGuaCG-GCGUCg--UGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 21186 | 0.72 | 0.175209 |
Target: 5'- aGCUCGGaCGGCcugGCCGCccaGGCugCCg -3' miRNA: 3'- gCGAGCC-GUUGua-CGGCG---UCGugGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 8693 | 0.71 | 0.19008 |
Target: 5'- uGC-CGGCAugGaaaGCCaGgAGCGCCCCa -3' miRNA: 3'- gCGaGCCGUugUa--CGG-CgUCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 18655 | 0.71 | 0.195278 |
Target: 5'- aGCcaUGGCGACAaccGCCGCAggGCugCCCa -3' miRNA: 3'- gCGa-GCCGUUGUa--CGGCGU--CGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 7524 | 0.7 | 0.217329 |
Target: 5'- uGCUCGGcCAACuugGCgaagccuucaCGCAGUugCCCc -3' miRNA: 3'- gCGAGCC-GUUGua-CG----------GCGUCGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 17072 | 0.7 | 0.223165 |
Target: 5'- gGCUCGGCcAgGUGgCGaguacccagGGCACCCCc -3' miRNA: 3'- gCGAGCCGuUgUACgGCg--------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 6878 | 0.69 | 0.267817 |
Target: 5'- aGUUCGGUGACcgGCUcCGGCGCCa- -3' miRNA: 3'- gCGAGCCGUUGuaCGGcGUCGUGGgg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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