miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 9420 1.11 0.000179
Target:  5'- cCGCUCGGCAACAUGCCGCAGCACCCCu -3'
miRNA:   3'- -GCGAGCCGUUGUACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 20131 0.83 0.026099
Target:  5'- gGCUCGGCAuagaGCAUGCCGUcgcGCACCuCCa -3'
miRNA:   3'- gCGAGCCGU----UGUACGGCGu--CGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 15464 0.79 0.05456
Target:  5'- gGC-CGGCAGCAucUGCUGCAGCuugaagaggaACCCCu -3'
miRNA:   3'- gCGaGCCGUUGU--ACGGCGUCG----------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 20973 0.77 0.068885
Target:  5'- aGUUCGGcCAGCAaGCugCGCAGCACCUCg -3'
miRNA:   3'- gCGAGCC-GUUGUaCG--GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37401 0.76 0.08194
Target:  5'- cCGCuagUCGGCAGCGUGgCGaC-GCGCCCCu -3'
miRNA:   3'- -GCG---AGCCGUUGUACgGC-GuCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 28538 0.76 0.091923
Target:  5'- uGCUCGGCGcCGgccagGUCGCGGCGCuaCCCg -3'
miRNA:   3'- gCGAGCCGUuGUa----CGGCGUCGUG--GGG- -5'
30424 3' -58.8 NC_006548.1 + 27085 0.75 0.103052
Target:  5'- uGCUgCGGCAGCcaguaCGCAGCGCCUCa -3'
miRNA:   3'- gCGA-GCCGUUGuacg-GCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 36752 0.75 0.109081
Target:  5'- aGCUCGGCGAC--GCuCGCAGagaGCCUCg -3'
miRNA:   3'- gCGAGCCGUUGuaCG-GCGUCg--UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 14543 0.74 0.118748
Target:  5'- aGCUCGGacuggauCAUcGCCGuCAGCGCCUCg -3'
miRNA:   3'- gCGAGCCguu----GUA-CGGC-GUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 21430 0.73 0.136648
Target:  5'- gGC-CGGCGGCAgaGUCGCGGCaaccgcucGCCCCu -3'
miRNA:   3'- gCGaGCCGUUGUa-CGGCGUCG--------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 33654 0.72 0.165879
Target:  5'- uCGCUCGGCcgGACAacggUGCC-CAGCGCgCUg -3'
miRNA:   3'- -GCGAGCCG--UUGU----ACGGcGUCGUGgGG- -5'
30424 3' -58.8 NC_006548.1 + 21186 0.72 0.175209
Target:  5'- aGCUCGGaCGGCcugGCCGCccaGGCugCCg -3'
miRNA:   3'- gCGAGCC-GUUGua-CGGCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 8693 0.71 0.19008
Target:  5'- uGC-CGGCAugGaaaGCCaGgAGCGCCCCa -3'
miRNA:   3'- gCGaGCCGUugUa--CGG-CgUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37691 0.71 0.19008
Target:  5'- aGgUCGGuCAACGUGUCGUgcGGCACCaCUa -3'
miRNA:   3'- gCgAGCC-GUUGUACGGCG--UCGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 26174 0.71 0.19008
Target:  5'- cCGC-CGGC-ACcgGCCGUAGgaagaacagugcCGCCCCa -3'
miRNA:   3'- -GCGaGCCGuUGuaCGGCGUC------------GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 18655 0.71 0.195278
Target:  5'- aGCcaUGGCGACAaccGCCGCAggGCugCCCa -3'
miRNA:   3'- gCGa-GCCGUUGUa--CGGCGU--CGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 25789 0.71 0.195278
Target:  5'- uGUUCGGCAcCAgguacuggaguUGCCGCuccAGCACCUg -3'
miRNA:   3'- gCGAGCCGUuGU-----------ACGGCG---UCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 27169 0.71 0.196862
Target:  5'- cCGCUUgcacagcagcauugaGGCGcuGCGuacuggcUGCCGCAGCAUCCUg -3'
miRNA:   3'- -GCGAG---------------CCGU--UGU-------ACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 23760 0.71 0.200601
Target:  5'- aGUUCGGCGGC--GCCGCccacgugcuugAGCACCUUg -3'
miRNA:   3'- gCGAGCCGUUGuaCGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 8423 0.71 0.200601
Target:  5'- uCGCUCacaGCGucaGCAUGCUGCAGauaGCCCa -3'
miRNA:   3'- -GCGAGc--CGU---UGUACGGCGUCg--UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.