Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30424 | 3' | -58.8 | NC_006548.1 | + | 12200 | 0.7 | 0.217329 |
Target: 5'- uGCUCGGCGGC---CCGCGGgAUCUCa -3' miRNA: 3'- gCGAGCCGUUGuacGGCGUCgUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 32854 | 0.66 | 0.412885 |
Target: 5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3' miRNA: 3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 32478 | 0.66 | 0.433894 |
Target: 5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3' miRNA: 3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 36253 | 0.66 | 0.424267 |
Target: 5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3' miRNA: 3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 19198 | 0.66 | 0.414769 |
Target: 5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3' miRNA: 3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 28141 | 0.68 | 0.303946 |
Target: 5'- aGUUCGGCcuGCAgGCCGCcAGcCGCCUg -3' miRNA: 3'- gCGAGCCGu-UGUaCGGCG-UC-GUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 20585 | 0.68 | 0.296431 |
Target: 5'- cCGCagCGGCGGCAgaggcUGCUGCGGCgucgACgCCu -3' miRNA: 3'- -GCGa-GCCGUUGU-----ACGGCGUCG----UGgGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 2799 | 0.69 | 0.261021 |
Target: 5'- cCGUacCGGCAGCGUGCuUGCccuGCGCCgCCu -3' miRNA: 3'- -GCGa-GCCGUUGUACG-GCGu--CGUGG-GG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 30573 | 0.69 | 0.261021 |
Target: 5'- gGCaUCGGCugguucCAUGCCaGCAguuGCACCCg -3' miRNA: 3'- gCG-AGCCGuu----GUACGG-CGU---CGUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 27410 | 0.69 | 0.254366 |
Target: 5'- uGCUCGGuCAAC-UGCCGCucCugCUCg -3' miRNA: 3'- gCGAGCC-GUUGuACGGCGucGugGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 33386 | 0.68 | 0.335462 |
Target: 5'- aCGCagGGCGuACAgcagGCugCGCAGCGCCgCa -3' miRNA: 3'- -GCGagCCGU-UGUa---CG--GCGUCGUGGgG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 8423 | 0.71 | 0.200601 |
Target: 5'- uCGCUCacaGCGucaGCAUGCUGCAGauaGCCCa -3' miRNA: 3'- -GCGAGc--CGU---UGUACGGCGUCg--UGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 23760 | 0.71 | 0.200601 |
Target: 5'- aGUUCGGCGGC--GCCGCccacgugcuugAGCACCUUg -3' miRNA: 3'- gCGAGCCGUUGuaCGGCG-----------UCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 27169 | 0.71 | 0.196862 |
Target: 5'- cCGCUUgcacagcagcauugaGGCGcuGCGuacuggcUGCCGCAGCAUCCUg -3' miRNA: 3'- -GCGAG---------------CCGU--UGU-------ACGGCGUCGUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 25789 | 0.71 | 0.195278 |
Target: 5'- uGUUCGGCAcCAgguacuggaguUGCCGCuccAGCACCUg -3' miRNA: 3'- gCGAGCCGUuGU-----------ACGGCG---UCGUGGGg -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 26174 | 0.71 | 0.19008 |
Target: 5'- cCGC-CGGC-ACcgGCCGUAGgaagaacagugcCGCCCCa -3' miRNA: 3'- -GCGaGCCGuUGuaCGGCGUC------------GUGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 37691 | 0.71 | 0.19008 |
Target: 5'- aGgUCGGuCAACGUGUCGUgcGGCACCaCUa -3' miRNA: 3'- gCgAGCC-GUUGUACGGCG--UCGUGG-GG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 33654 | 0.72 | 0.165879 |
Target: 5'- uCGCUCGGCcgGACAacggUGCC-CAGCGCgCUg -3' miRNA: 3'- -GCGAGCCG--UUGU----ACGGcGUCGUGgGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 21430 | 0.73 | 0.136648 |
Target: 5'- gGC-CGGCGGCAgaGUCGCGGCaaccgcucGCCCCu -3' miRNA: 3'- gCGaGCCGUUGUa-CGGCGUCG--------UGGGG- -5' |
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30424 | 3' | -58.8 | NC_006548.1 | + | 14543 | 0.74 | 0.118748 |
Target: 5'- aGCUCGGacuggauCAUcGCCGuCAGCGCCUCg -3' miRNA: 3'- gCGAGCCguu----GUA-CGGC-GUCGUGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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