miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30424 3' -58.8 NC_006548.1 + 12200 0.7 0.217329
Target:  5'- uGCUCGGCGGC---CCGCGGgAUCUCa -3'
miRNA:   3'- gCGAGCCGUUGuacGGCGUCgUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 32854 0.66 0.412885
Target:  5'- aCGCUUGcCAGCAgcuggauguccgGCCacaccgGCAGCGCCCa -3'
miRNA:   3'- -GCGAGCcGUUGUa-----------CGG------CGUCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 32478 0.66 0.433894
Target:  5'- cCGCgaaCGGCAACG-GCgGCgacGGCugCCg -3'
miRNA:   3'- -GCGa--GCCGUUGUaCGgCG---UCGugGGg -5'
30424 3' -58.8 NC_006548.1 + 36253 0.66 0.424267
Target:  5'- aGUUCGGCGGCuggaCUGCGGaCGUCCCg -3'
miRNA:   3'- gCGAGCCGUUGuac-GGCGUC-GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 19198 0.66 0.414769
Target:  5'- cCGCUCGGaucuccCAGC--GCUGC-GCugCCCg -3'
miRNA:   3'- -GCGAGCC------GUUGuaCGGCGuCGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 28141 0.68 0.303946
Target:  5'- aGUUCGGCcuGCAgGCCGCcAGcCGCCUg -3'
miRNA:   3'- gCGAGCCGu-UGUaCGGCG-UC-GUGGGg -5'
30424 3' -58.8 NC_006548.1 + 20585 0.68 0.296431
Target:  5'- cCGCagCGGCGGCAgaggcUGCUGCGGCgucgACgCCu -3'
miRNA:   3'- -GCGa-GCCGUUGU-----ACGGCGUCG----UGgGG- -5'
30424 3' -58.8 NC_006548.1 + 2799 0.69 0.261021
Target:  5'- cCGUacCGGCAGCGUGCuUGCccuGCGCCgCCu -3'
miRNA:   3'- -GCGa-GCCGUUGUACG-GCGu--CGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 30573 0.69 0.261021
Target:  5'- gGCaUCGGCugguucCAUGCCaGCAguuGCACCCg -3'
miRNA:   3'- gCG-AGCCGuu----GUACGG-CGU---CGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 27410 0.69 0.254366
Target:  5'- uGCUCGGuCAAC-UGCCGCucCugCUCg -3'
miRNA:   3'- gCGAGCC-GUUGuACGGCGucGugGGG- -5'
30424 3' -58.8 NC_006548.1 + 33386 0.68 0.335462
Target:  5'- aCGCagGGCGuACAgcagGCugCGCAGCGCCgCa -3'
miRNA:   3'- -GCGagCCGU-UGUa---CG--GCGUCGUGGgG- -5'
30424 3' -58.8 NC_006548.1 + 8423 0.71 0.200601
Target:  5'- uCGCUCacaGCGucaGCAUGCUGCAGauaGCCCa -3'
miRNA:   3'- -GCGAGc--CGU---UGUACGGCGUCg--UGGGg -5'
30424 3' -58.8 NC_006548.1 + 23760 0.71 0.200601
Target:  5'- aGUUCGGCGGC--GCCGCccacgugcuugAGCACCUUg -3'
miRNA:   3'- gCGAGCCGUUGuaCGGCG-----------UCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 27169 0.71 0.196862
Target:  5'- cCGCUUgcacagcagcauugaGGCGcuGCGuacuggcUGCCGCAGCAUCCUg -3'
miRNA:   3'- -GCGAG---------------CCGU--UGU-------ACGGCGUCGUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 25789 0.71 0.195278
Target:  5'- uGUUCGGCAcCAgguacuggaguUGCCGCuccAGCACCUg -3'
miRNA:   3'- gCGAGCCGUuGU-----------ACGGCG---UCGUGGGg -5'
30424 3' -58.8 NC_006548.1 + 26174 0.71 0.19008
Target:  5'- cCGC-CGGC-ACcgGCCGUAGgaagaacagugcCGCCCCa -3'
miRNA:   3'- -GCGaGCCGuUGuaCGGCGUC------------GUGGGG- -5'
30424 3' -58.8 NC_006548.1 + 37691 0.71 0.19008
Target:  5'- aGgUCGGuCAACGUGUCGUgcGGCACCaCUa -3'
miRNA:   3'- gCgAGCC-GUUGUACGGCG--UCGUGG-GG- -5'
30424 3' -58.8 NC_006548.1 + 33654 0.72 0.165879
Target:  5'- uCGCUCGGCcgGACAacggUGCC-CAGCGCgCUg -3'
miRNA:   3'- -GCGAGCCG--UUGU----ACGGcGUCGUGgGG- -5'
30424 3' -58.8 NC_006548.1 + 21430 0.73 0.136648
Target:  5'- gGC-CGGCGGCAgaGUCGCGGCaaccgcucGCCCCu -3'
miRNA:   3'- gCGaGCCGUUGUa-CGGCGUCG--------UGGGG- -5'
30424 3' -58.8 NC_006548.1 + 14543 0.74 0.118748
Target:  5'- aGCUCGGacuggauCAUcGCCGuCAGCGCCUCg -3'
miRNA:   3'- gCGAGCCguu----GUA-CGGC-GUCGUGGGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.